Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00354 ATGATTTCTCGATTTCTTGCTAGTGTAAAGAAGAAGAAAAAGGAAGGATTCACCATGTCCGCACCAGGAGTACAGTTACACATCCAACAACACCATGTGGTGATGGATAATGGTATTGTTCAAGTTACATTATCAAAACCGGATGGAATTGTCACTGGGATACGATATAACGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAGTCAAAGGCGGCTTTGATGTGATTAGAGGAACGCGTTTCGAAGTTATAGTTCAAAACGAGGATCAGGTGGAGCTATCATTCAAAAGAATGTGGGATCATTCTCTTGAGGGAAAGTATGTTCCTTTAAATATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGATTCTACTCTTACGGAATTTATGAGCACTTGCATGGATGGCCAGATTTTGATCTTACTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCTGACGACAGGCAAAAGATTATGCCTTATCCAGAAGATCGGATGCCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCTGTTCTACTAGTAAATCCTAAGGATCCACGATTGAAAGGAGAGGTAGATGACAAGTATCAATATTCATGTAAAAATATAGACAATAAAGTCCATGGGTGGATATCTTTCAATCCACCCGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAACTTGACCTCTCATGTAGGACCAACCACACTTGCTATGTTTCTTAGTGGTCACTATGCCGGACAAGATTTGGTACCCAAATGGAGAGGCGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGATCAACTGACCCACTCGTGCTATGGGAGGATGCAAAAATAAAAATGGCGACCGAAGTTCAAAGCTGGCCATATTTATTCCCTGCTTCAGAAGATTTTTTAAAACCAGATCAACGGGGCAACGTTAGTGGTAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATACCAGCTAATGGTGCTTATGTTGGTCTGGCTCCACCGGGAGATGCAGGATCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGTGAATGGATTTTTTACGATTAACAATGTACTTCCTGGTGACTACAACCTTTTTGCCTCGGTACCTGGTTTTGTTGGAGACTACAGATTCGGTGATTTTGTGAAGATAACCTCAGGTTCTTGCATTGAACTGGGGGAAGTTGTATATGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATACCTGATAGATCCGCCGCAGAGTTTTATGCCCCTGATCCCAATCCACAATATATTAATAAGCTTTTTATAAACCATCCCGACAGGTTCCGGCAGTATGGATTGTGGGAGAGATATTCAGAATTATATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTATGCTCATGTTCCCAGAAAAAGAGAGGATAACACTCATGAAGGAACAACTTGGCAAATAAAGTTTGAGCTCAGTGGAGTTAATCAAGGAACTACTTATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGATCCCAATGCAGGGCGTCCCGTATTTACCACAGGATTAATAGGAAGGGAGAACTCAGTTGCAAGACTCGGAAGTCATGGACTCTATTGGCTGTACCATGTGAACATACCAAGTTCTCTTCTTGTTGATGGCTCAAATACTATATATTTTACACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTGCTGTATGACTATATTCGTTTGGAAGGACCAGCTTGTTCTTAA 1953 0.4173 MISRFLASVKKKKKEGFTMSAPGVQLHIQQHHVVMDNGIVQVTLSKPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGVKGGFDVIRGTRFEVIVQNEDQVELSFKRMWDHSLEGKYVPLNIDKRFILLRGSSGFYSYGIYEHLHGWPDFDLTETRITFKLRKDKFQYMAMADDRQKIMPYPEDRMPGRCQPLAYQEAVLLVNPKDPRLKGEVDDKYQYSCKNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFLSGHYAGQDLVPKWRGGEPWKKVFGPVYIYLNSGSTDPLVLWEDAKIKMATEVQSWPYLFPASEDFLKPDQRGNVSGRLLVLDRYISTDLIPANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTINNVLPGDYNLFASVPGFVGDYRFGDFVKITSGSCIELGEVVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINKLFINHPDRFRQYGLWERYSELYPDADLVYTIGVSDYRKDWFYAHVPRKREDNTHEGTTWQIKFELSGVNQGTTYKLRVAIASATLAELQIRVNDPNAGRPVFTTGLIGRENSVARLGSHGLYWLYHVNIPSSLLVDGSNTIYFTQPRCTSPFQGLLYDYIRLEGPACS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00354 650 CDD RGL4_N 32 314 - -
Vivi3g00354 650 Gene3D - 345 440 - -
Vivi3g00354 650 Gene3D - 23 320 IPR014718 GO:0030246
Vivi3g00354 650 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 648 - -
Vivi3g00354 650 CDD RGL4_C 458 645 - -
Vivi3g00354 650 CDD RGL4_M 347 444 IPR029413 -
Vivi3g00354 650 Gene3D - 454 645 - -
Vivi3g00354 650 SUPERFAMILY Galactose mutarotase-like 33 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi3g00354 650 Pfam Rhamnogalacturonate lyase family 19 218 IPR010325 -
Vivi3g00354 650 SUPERFAMILY Galactose-binding domain-like 453 645 IPR008979 -
Vivi3g00354 650 FunFam Rhamnogalacturonate lyase B 344 443 - -
Vivi3g00354 650 SUPERFAMILY Starch-binding domain-like 346 443 IPR013784 GO:0030246
Vivi3g00354 650 Pfam Polysaccharide lyase family 4, domain II 370 442 IPR029413 -
Vivi3g00354 650 Pfam Polysaccharide lyase family 4, domain III 456 644 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00354 Vivi-Chr3 6282669 6289040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00354 19 647 Polysaccharide Lyase AT1G09910 69.414 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00354 K18195 - gmx:100814185 1165.98