Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00353 ATGATTTCTCGATTTCTTGCTAGTGTAAAGAAGAAGAAAAAGGAAGGATTCACCATGTCCGCACCAGGAGTACAGTTACACATCCAACAACACCATGTGGTGATGGATAATGGTATTGTTCAAGTTACATTATCAAAACCGGATGGAATTGTCACTGGGATACGATATAACGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAGTCAAAGGCGGCTTTGATGTGATTAGAGGAACGCGTTTCGAAGTTATAGTTCAAAACGAGGATCAGGTGGAGCTATCATTCAAAAGAATGTGGGATCATTCTCTTGAGGGAAAGTATGTTCCTTTAAATATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGATTCTACTCTTACGGAATTTATGAGCACTTGCATGGATGGCCAGATTTTGATCTTACTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCTGACGACAGGCAAAAGATTATGCCTTATCCAGAAGATCGGATGCCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCTGTTCTACTAGTAAATCCTAAGGATCCACGATTGAAAGGAGAGGTAGATGACAAGTATCAATATTCATGTAAAAATATAGACAATAAAGTCCATGGGTGGATATCTTTCAATCCACCCGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAACTTGACCTCTCATGTAGGACCAACCACACTTGCTATGTTTCTTAGTGGTCACTATGCCGGACAAGATTTGGTACCCAAATGGAGAGGCGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGATCAACTGACCCACTCGTGCTATGGGAGGATGCAAAAATAAAAGTATACCTAATGCACATATCCCATATGGCGACCGAAGTTCAAAGCTGGCCATATTTATTCCCTGCTTCAGAAGATTTTTTAAAACCAGATCAACGGGGCAACGTTAGTGGTAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATACCAGCTAATGGTGCTTATGTTGGTCTGGCTCCACCGGGAGATGCAGGATCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGTGAATGGATTTTTTACGATTAACAATGTACTTCCTGGTGACTACAACCTTTTTGCCTCGGTACCTGGTTTTGTTGGAGACTACAGATTCGGTGATTTTGTGAAGATAACCTCAGGTTCTTGCATTGAACTGGGGGAAGTTGTATATGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATACCTGATAGATCCGCCGCAGAGTTTTATGCCCCTGATCCCAATCCACAATATATTAATAAGCTTTTTATAAACCATCCCGACAGGTTCCGGCAGTATGGATTGTGGGAGAGATATTCAGAATTATATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTATGCTCATGTTCCCAGAAAAAGAGAGGATAACACTCATGAAGGAACAACTTGGCAAATAAAGTTTGAGCTCAGTGGAGTTAATCAAGGAACTACTTATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGATCCCAATGCAGGGCGTCCCGTATTTACCACAGGATTAATAGGAAGGGAGAACTCAGTTGCAAGACTCGGAAGTCATGGACTCTATTGGCTGTACCATGTGAACATACCAAGTTCTCTTCTTGTTGATGGCTCAAATACTATATATTTTACACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTGCTGTATGACTATATTCGTTTGGAAGGACCAGCTTGTTCTTAA 1977 0.4168 MISRFLASVKKKKKEGFTMSAPGVQLHIQQHHVVMDNGIVQVTLSKPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGVKGGFDVIRGTRFEVIVQNEDQVELSFKRMWDHSLEGKYVPLNIDKRFILLRGSSGFYSYGIYEHLHGWPDFDLTETRITFKLRKDKFQYMAMADDRQKIMPYPEDRMPGRCQPLAYQEAVLLVNPKDPRLKGEVDDKYQYSCKNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFLSGHYAGQDLVPKWRGGEPWKKVFGPVYIYLNSGSTDPLVLWEDAKIKVYLMHISHMATEVQSWPYLFPASEDFLKPDQRGNVSGRLLVLDRYISTDLIPANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTINNVLPGDYNLFASVPGFVGDYRFGDFVKITSGSCIELGEVVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINKLFINHPDRFRQYGLWERYSELYPDADLVYTIGVSDYRKDWFYAHVPRKREDNTHEGTTWQIKFELSGVNQGTTYKLRVAIASATLAELQIRVNDPNAGRPVFTTGLIGRENSVARLGSHGLYWLYHVNIPSSLLVDGSNTIYFTQPRCTSPFQGLLYDYIRLEGPACS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00353 658 SUPERFAMILY Galactose-binding domain-like 461 653 IPR008979 -
Vivi3g00353 658 SUPERFAMILY Starch-binding domain-like 354 451 IPR013784 GO:0030246
Vivi3g00353 658 CDD RGL4_N 32 314 - -
Vivi3g00353 658 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 28 656 - -
Vivi3g00353 658 Gene3D - 462 653 - -
Vivi3g00353 658 Gene3D - 353 448 - -
Vivi3g00353 658 CDD RGL4_M 355 452 IPR029413 -
Vivi3g00353 658 Gene3D - 23 326 IPR014718 GO:0030246
Vivi3g00353 658 SUPERFAMILY Galactose mutarotase-like 33 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi3g00353 658 Pfam Polysaccharide lyase family 4, domain III 464 652 IPR029411 -
Vivi3g00353 658 CDD RGL4_C 466 653 - -
Vivi3g00353 658 Pfam Polysaccharide lyase family 4, domain II 378 450 IPR029413 -
Vivi3g00353 658 FunFam Rhamnogalacturonate lyase B 352 451 - -
Vivi3g00353 658 Pfam Rhamnogalacturonate lyase family 19 218 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00353 Vivi-Chr3 6282669 6289041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00353 19 655 Polysaccharide Lyase AT1G09910 68.545 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00353 K18195 - gmx:100814185 1158.67