Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00351 ATGTCTGCACTAGGGGTGCAACTCACCATTCAAGATCATCATGTGGTGATGGACAATGGCATACTAAAAGTCACTTTATCAAATCCTGATGGAATTGTGACTGGAATTGAGTATAATGGCATTGACAACTTGCTTGAAGTCTTGAATGATGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCTCCAACAAGTACAGGAACCACCGGAAAATTCGATGTGATAAAGGGAAGCACATTCAAAGTTATATTGGAGGATGAAGATCAACTTGAGTTATCATTCTCTAGGTCTTGGGATACCTCCCTAGAGGGAAAGTTGGTTCCATTAAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCGTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTTAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAAAGAAATATGCCTCTTCCTGATGACAGAATACCACCAAGAGGCCAACCACTTGCCTATCCAGAAGCAGTTCTACTCGTCGATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGACAACAAAGATAGTCAAGTTCATGGATGGATTTGCAAGGATCCTGCTGTTGGATTCTGGCTCATTACACCTAGTAATGAGTTTCGATCGGGTGGACCTGTTAAACAAAACTTAACTTCTCACGTGGGACCTACCACGCTTGCCGTGTTTCTCAGTGCTCATTATAGCGGAGAGGATTTAGTGCCAAAGTTCAAAGCAAATGAGGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCATATTATGAAGATTATGACCCAATTAAGCTATGGGATGATGCTAAACTTCAGATGTTAGTTGAAGTTCAAAGTTGGCCCTACAATTTTCCTGAATCAGATGATTTTCCAAAATGGGACGAACGTGGTAACGTTAGTGGCAGATTAATGGTTAAAGAGAGGTATATAGATGATGATGATTATTTATCAGCAAAATATGCTTATGTTGGCTTGGCTACACCAGGAGATGTAGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGACTCAAGCGGATGATGATGGTTATTTCTCCATTGGCAATATTCGTGCGGGCGACTATAATCTTTATGCATGGGTACCTGGTTTTATTGGTGATTATAAGAATGATGTAGTAATCACCATAACAGAAGGTTCTGATATAGATGTTGGTGATCTTGTTTATGAGCCACCAAGAAATGGACCAACATTGTGGGAAATAGGCATCCCTGATCGCTCGGCTGCTGAGTTCTATGTTCCTGATCCAAATCCAAAATATATCAACAAACTATATGTCGATCATCCTGATAAGTTTAGGCAATATGGGATATGGGAGAGATATGCAGAACTATACCCTGAAAAAGATTTGATCTACACTATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTGACAAGGAAGAAAGAAGATAGTACATACCAAGGAACCACTTGGCAAATCAAGTTTAATCTTGATAATGTGAACAAAAAAGAAAGTTATAAACTTCGAATCGCTTTGGCATCAGCTACATTTTCGGAACTTCAGGTACGAGTTAATGACCCGAAAGCAAATCGCCCTATATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTATAATATTGACATAAAAGGTTCTTTACTTGTTGAAGGAGAAAACAATACCATCTTTTTGACACAAACAAGAAGCAATGGCCCTTTTCAAGCCATTATGTATGATTATATTCGTTTGGAAGGTCCTGCAAGCTCTAGCTTCAATAAGAAAATTTGA 1941 0.3859 MSALGVQLTIQDHHVVMDNGILKVTLSNPDGIVTGIEYNGIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGKFDVIKGSTFKVILEDEDQLELSFSRSWDTSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRIPPRGQPLAYPEAVLLVDPIEPELKGEVDDKYQYSCDNKDSQVHGWICKDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKANEAWKKVFGPVFIYVNSPYYEDYDPIKLWDDAKLQMLVEVQSWPYNFPESDDFPKWDERGNVSGRLMVKERYIDDDDYLSAKYAYVGLATPGDVGSWQRECKNYQFWTQADDDGYFSIGNIRAGDYNLYAWVPGFIGDYKNDVVITITEGSDIDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGIWERYAELYPEKDLIYTIGVSDYTKDWFFAQVTRKKEDSTYQGTTWQIKFNLDNVNKKESYKLRIALASATFSELQVRVNDPKANRPIFSSGLIGRDNSIARHGIHGLYWLYNIDIKGSLLVEGENNTIFLTQTRSNGPFQAIMYDYIRLEGPASSSFNKKI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00351 646 SUPERFAMILY Galactose mutarotase-like 8 300 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi3g00351 646 SUPERFAMILY Starch-binding domain-like 371 432 IPR013784 GO:0030246
Vivi3g00351 646 Gene3D - 443 635 - -
Vivi3g00351 646 CDD RGL4_C 447 635 - -
Vivi3g00351 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 638 - -
Vivi3g00351 646 SUPERFAMILY Galactose-binding domain-like 442 635 IPR008979 -
Vivi3g00351 646 Gene3D - 3 295 IPR014718 GO:0030246
Vivi3g00351 646 Pfam Polysaccharide lyase family 4, domain III 445 634 IPR029411 -
Vivi3g00351 646 CDD RGL4_M 335 435 IPR029413 -
Vivi3g00351 646 Pfam Polysaccharide lyase family 4, domain II 359 431 IPR029413 -
Vivi3g00351 646 Gene3D - 334 432 - -
Vivi3g00351 646 CDD RGL4_N 8 294 - -
Vivi3g00351 646 FunFam Rhamnogalacturonate lyase B 332 432 - -
Vivi3g00351 646 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00351 Vivi-Chr3 6271253 6275221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00351 1 638 Polysaccharide Lyase AT1G09890 71.518 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00351 K18195 - gmx:100793563 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00351 3 6271253 6275221 Vivi3g00351 3 6271253 6275221 ECH