Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00350 ATGAACTTCAACAATATTTTCTTGTTCTTGATTTTGCAATTCATCTTCATTCTTGGTTGCAGTAGTTCTGATAATTCAGGAGTGCGATTGGATATTCAAGAAAAACATGTGATAATTGATAATGGCATAGTCCAAGTCAATATATCAAACCCAGAAGGATATGTCATTGGAATTCAATATAATGGAATTGATAATTTGCTTGAAGTTCAAAATAAAGAATTTGACAGAGGGTATTGGGATATTGTGTGGGAGCAGGGTGGGGAGAAAAGAACTGAAAAAGGAGCAAAGAAAAAGGATTCTTTAGACAGGATGGAAACAAATAATTTGACGGTGATAGTTGAAAATGAAGAACAAGTAGAGTTATCTTTCACTAGAATATGGAATTTCTCTCTTGAGGGAAAGCTTGCACCACTCAATTTTGATAAAAGATTTATAATGCTTCGTGGTTCTTCTGGATTTTATACCTATGCAATTTATGAGCATTTGAAGGAATGGCCAGCTTTTGATCTTGACAATACTAGGGTTGCATTTAAGCCTAGAAAAGATAAGTTCAATTACATGGTTATAGCAGACGACAGACAAAGATTTATGCCTCTGCCGGATGACCGATTACCAGGAAGAGGGCAAGTTTTGGCTTACAAGGAGGCCGTTCGCCTTGTTAATCCAATCGAGCCCGAGTTCAAAGGAGAGGTGGATGATAAATACGAGTACTCGATCGAGAGTAGAAAAAACCAAGTTCATGGTTGGATTTCCATTAATTCATCAGAATCAAAATCAACTGGGTTCTGGATAATTACTCCTAGTAATGAATTCAGATCTGCTGGACCCTTAAAACAATACCTTGCTTCCCACGCTGGGCCTACCTCACTATCTGTATTTCATAGCACACATTATTCAGGGGCAGATTTGATCATGAAATTTGGAGTAAATGAGCCATGGAAGAAAGTCTTTGGGCCTATATTTATATACCTTAATTCTGATTCTTATGGGCTTAGCCCAATCAACCTCTGGGAGGATGCGAAACACCAGATGGTTAATGAAGTTGAAAGCTGGCCATATACATTTCCTGCTTCAAAGGACTTTCTCTCATCTGCCCAAAGAGGTAAAGTTGAAGGTAGATTGCTTGTTCGAGATAGGTTCATCAGTGATGCATTTGTTCCGGTCAAAGGTGCTTATGTGGGATTAGCACCACCGGGAGATGTTGGCTCATGGCAAAGAGAATGCAAGGGTTATCAATTTTGGACTATTACTGATGATAAAGGCTATTTCTCAATAATTAACATACTTCCTGGTGACTATAATCTGTATTCTTGGGTTAATGGATACATTGGTGATTATCAATATAACAAAAGCATTAACATAACCTCAGGTAGTGAATTTAAATTGGGTGAGCTTGTTTATGAGCCACCGAGAGATGGCCCTACATTGTGGGAGATAGGTATCCCCGATCGCTCGGCCGCCGAGTTTTATGTTCCTGATCCAAATCCTTTGTACATAAACAAACTTTACCTCAACCATTCAGACAGGTATAGGCAATATGGTTTGTGGGAGAGATATGCTGAACTGTATCCAAAAGAGGATCTAGTTTACAATGTTGGCACTAGTGATTACAAAAAAGATTGGTATTTTGCTCAGAATACCAGGAAAAAAGACAACAACACTTACGAAGGAACTACATGGCAAATTAATTTCAATCTTGATAATGTGAATACTAATAGTACCTACAAATTGCGACTAGCTCTAGCATCTATTCATTTTGCAGAGTTACAGGTTCGCATAAACAATTCAGATGCAAATCCGCCTTTATTTACCACTAAAGTTATTGGAAAGGATAATACTATAGCAAGACATGGAATTCATGGAATGTACAGATTATACAATGTTGATGTACAAGGAAATCTTCTTGTGAATGGGAACAATACAATCTTTCTAACACAAGCTGCCAACAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTCAAATACATTTTAATGATTAG 2022 0.3749 MNFNNIFLFLILQFIFILGCSSSDNSGVRLDIQEKHVIIDNGIVQVNISNPEGYVIGIQYNGIDNLLEVQNKEFDRGYWDIVWEQGGEKRTEKGAKKKDSLDRMETNNLTVIVENEEQVELSFTRIWNFSLEGKLAPLNFDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPDDRLPGRGQVLAYKEAVRLVNPIEPEFKGEVDDKYEYSIESRKNQVHGWISINSSESKSTGFWIITPSNEFRSAGPLKQYLASHAGPTSLSVFHSTHYSGADLIMKFGVNEPWKKVFGPIFIYLNSDSYGLSPINLWEDAKHQMVNEVESWPYTFPASKDFLSSAQRGKVEGRLLVRDRFISDAFVPVKGAYVGLAPPGDVGSWQRECKGYQFWTITDDKGYFSIINILPGDYNLYSWVNGYIGDYQYNKSINITSGSEFKLGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYINKLYLNHSDRYRQYGLWERYAELYPKEDLVYNVGTSDYKKDWYFAQNTRKKDNNTYEGTTWQINFNLDNVNTNSTYKLRLALASIHFAELQVRINNSDANPPLFTTKVIGKDNTIARHGIHGMYRLYNVDVQGNLLVNGNNTIFLTQAANNGPFVGILYDYIRLEGPPQIHFND 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00350 673 Pfam Polysaccharide lyase family 4, domain II 389 459 IPR029413 -
Vivi3g00350 673 FunFam Rhamnogalacturonate lyase B 363 462 - -
Vivi3g00350 673 CDD RGL4_N 36 328 - -
Vivi3g00350 673 Gene3D - 473 664 - -
Vivi3g00350 673 SUPERFAMILY Galactose mutarotase-like 35 330 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi3g00350 673 Gene3D - 29 319 IPR014718 GO:0030246
Vivi3g00350 673 SUPERFAMILY Starch-binding domain-like 364 462 IPR013784 GO:0030246
Vivi3g00350 673 CDD RGL4_C 477 664 - -
Vivi3g00350 673 Gene3D - 363 462 - -
Vivi3g00350 673 Pfam Rhamnogalacturonate lyase family 22 231 IPR010325 -
Vivi3g00350 673 Pfam Polysaccharide lyase family 4, domain III 475 663 IPR029411 -
Vivi3g00350 673 SUPERFAMILY Galactose-binding domain-like 472 664 IPR008979 -
Vivi3g00350 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 33 667 - -
Vivi3g00350 673 CDD RGL4_M 366 465 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00350 Vivi-Chr3 6253321 6258122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00350 28 671 Polysaccharide Lyase AT1G09880 62.287 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00350 K18195 - gmx:100786488 1087.79