Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00340 ATGGAGTTTTATGATGGAGATTTCATGGAAGAACTAATGGCTCTAAGAAGAGAAACTCCAACTCAAGAAGAAAACCAATTCTTCTCATCATCAAGTAACAACAACAACAACTTGAGTTTCGAAAACTGTTTCGATCAAAACTCTTTATGCTATCAACAAAACTCTCAACATTTTCCTCAAAGCTGCATCAACAATGATTACTACAGTAACAGTTTCAATGAAATCTATGATTCATTGCTTCAAGAATCTTCAACACCTCAGATTCTTGATTCGTATTATAATAATAATACACTCGACGCGCCGTTTGTTTCTCAAGAAGATTTTCCACTGTCCATGATTGGAGAAGAAGAAGATCAATGTTTGCTTGGCGAAGAGATTAAGAATTTGGAGCTACAAACAACGTGTAAAATGGAGGAAACTCAATCACCTGAAATGCCGGTAGTTTTCAACACTGGAAACAGTTTGGAGAGAAAGAATCGGTCGAAGAAGCTTCAAGGACAACCCTCGAAGAATTTAATGGCGGAAAGGAGACGACGGAAGAGATTAAACGATCGTCTATCGATGCTCCGAGCAATTGTCCCTAAGATAAGCAAGATGGATCGAACGGCTATACTCGGAGATACTATTGATTACATGAAAGAGCTTTTAGAGAAAATCAACAATCTACAACAAGAAATTGAACTAGATTCAAACATGTCAAGCATTGTCAAAGATGTAAAGCCAAATGAAATCTTAATCAGAAACTCTCCAAAGTTTGAGGTGGAGAGAGGCCTAGACACAAGGGTTGAAATTTGTTGTGCAGGGAAACCAGGGCTATTGCAATCCACAGTGAACACATTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTTATAAGTTGCTTCAATGAGTTCTCAATGCAAGCTTCTTGCTCAGAGGAATTTGAGCGAAGGACAATGTTGAGTTCTGAAGATATTAAGCAAGCTTTATTTAGAAGTGCAGGGTATGGAGGAAGATGTTTGTGA 1005 0.3801 MEFYDGDFMEELMALRRETPTQEENQFFSSSSNNNNNLSFENCFDQNSLCYQQNSQHFPQSCINNDYYSNSFNEIYDSLLQESSTPQILDSYYNNNTLDAPFVSQEDFPLSMIGEEEDQCLLGEEIKNLELQTTCKMEETQSPEMPVVFNTGNSLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMSSIVKDVKPNEILIRNSPKFEVERGLDTRVEICCAGKPGLLQSTVNTLEALGLEIQQCVISCFNEFSMQASCSEEFERRTMLSSEDIKQALFRSAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00340 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 36 329 - -
Vivi3g00340 334 Coils Coil 205 232 - -
Vivi3g00340 334 Gene3D - 154 231 IPR036638 GO:0046983
Vivi3g00340 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Vivi3g00340 334 MobiDBLite consensus disorder prediction 156 177 - -
Vivi3g00340 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 228 IPR036638 GO:0046983
Vivi3g00340 334 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Vivi3g00340 334 SMART finulus 172 221 IPR011598 GO:0046983
Vivi3g00340 334 CDD ACT_UUR-ACR-like 260 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00340 Vivi-Chr3 6041327 6043122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00340 137 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.881 7.09e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g00340 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00340 - - cam:101489960 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00340 3 6041327 6043122 Vivi3g00340 3 6041327 6043122 ECH