Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00336 ATGGGTACTGGATGGAGAAGAGCCTTTTGTACACGCGACCCTGAATCTACTATTTCTGATAGTAACAAGAAGAACCGAAGCCCGAGCCCAAGCCCGAGAAGCTGTGCTCGGTTGAGTTTTCTTTCTGGTGGTGGTAGTAATAGTTCCACTCCACGGTTGAATCAATCTCAACCTGCTTCAAGTCCAAGCCTGCGTTGTCGTACAATAACTGAAGCAGCTTCTCAAATGAATGATAGCCCCAGATTTCAAAGCAAAAGTAGCAGTAACACTCCAAGGATAACGAAATCTCCTAGAGTAAATTCAGCGTCGAATCCAAGTTCTCCTCGCTCTCCTTTGAAGTTGTCTCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGCGGAATCTGTTTGAATAGTGTGAAAACTGGACAAGGAATGGCGATTTACACGGCGGAATGTGCACATGCTTTTCATTTCCCGTGCATCGCAGCACATGTACGCAATCATGCTACTCTTGTTTGCCCTGTCTGCAACGCCACATGGAAGGACGTTCCGCTACTAGCGGCGCACAAGAATCTCGCTGCTCAACAATCTCACACAAACCACTCCAATGGAAATGATAATTCAAAACAAATGGAAAATCCACCTCCAGTTTTCAGAACCAAGAACTTGAATCAGTCTCAACATCATCAACAACATCAGCAACAATCAGAATCAACGAGATCTTACGACGATGATGAGCCTCTTCTTTCTTCTTCCGCCGGTGGTGGAAGGATTATCACTATTCCTGAAGTTGATGAAAACGTGGAAGATGATGAGGATGACAACGACAACGGCGAGTTTCAAGGTTTTTTCGTTAACACAAAATCTACATCATCTAACAAATCCCACTCCGACGATATACAATCTGGTGACGGAGATTCAAGAACTGTCCAGGTGAAGTTAATGCCAGAGTGTGCAGTCGTATCAGTTTCCAGAACACACGAAACATACGCTTTGGTTTTGAAAGTGAAAGCACCGCCGCCCCTCCGCGGCGGAACCAGCACTCTGGATCCTTCACGGCGAGCACCGATAGATCTCGTAACAGTACTAGATATTGGAGGAAGCATGACTAGTGCAAAGCTTCAAATGCTAAAGCGCGCGATGCGTTTGGTAATTTCCTCATTAGGCCCAGCTGATAGGCTTTCTATTGTCGCATTTTCTTCTATTTCCAAACGGCTCTTACCGTTGAGAAGAATGACGGCTCAAGGTCAGCGTATGGCTCGGCGCATCATTGACCGCCTTGTCACCGGTGAAGGAAACGGCTTAGGAGAGGCTTTGAGGAAAGCAACAAGAGTATTGGAAGATCGTAGAGAAAGAAACCCTGTTTGTAGCGTCATGCTTTTATCTGACGGTCAAGATGAAAAGGTTCATAACAGTAACAAACAAAATCAACGCAAGACATTCAGCCACGCGTCCTCGACCCGGTTTGCTCACATTGAAATACCGGTTCACGCGTTTGGGTTTGGAAGTAAAACCGGTTACAGTCATGAACCTGGGGAAGACGCGTTTGCTAAATGCGTTGGTGGGCTTTTGAGTGTTGTAGTTCAGGACTTGAGGATTCAATTGGGCTTTCAATCTGATTCGGCCCGGGCCGAAATTAGTGCTATATATTCCTGCAGTGGTAGGCCCACGCTGCTAAGCTTAGGAGCCGTACGGCTCGGCGATTTATACGCTGAGGAAGAAAGAGAGCTATTAGTTGAAATGAGAGTTCCCTTGTCAACTTTGGGTACAGGGACCAACCATGTGATGACGGTACGGTGTCTTTATAAGGACCCAGCAAGTCAAGAGATAGTATACGGTAGAGAACAGGGACTTACAGTGCAACTACATAATCAGAATCAGTTTCAGACCGTACGATCATCACAAACCAGGATCGAGAGGCTGAGAAACCTGTTCATAACTACCAGAGCCATAGCTGAGTCAAGGAGACTTCTAGATCATAACAGTGACTTCACCAGCGCCCAACATTTACTTTCTTCAGCTCGTGCGCTTTTGATTCAATCTGGCTCGGCTTCGGCTGAACAGTATGTTCGCGGCTTGGAAGCTGAGCTGGCAGAGCTTCATTGGAGGAGACAACAAGAACAAGTTCAAGTTGAGGCTCAACAGCAACAAATGGTGCAAAGAAGAAGAGGAGTTGAGAGAGAGATGAATAGTAATATGGTGGATGAAAATGGTGAGCCGCTTACACCTACATCAGCTTGGAGAGCGGCTGAGATGCTGGCTAAGATGGCTATGGTCAAGAAGTCCTTGAATAAAGTCAGCGACTTACACGGCTTCGAAAATGCTAGGTTTTAA 2319 0.461 MGTGWRRAFCTRDPESTISDSNKKNRSPSPSPRSCARLSFLSGGGSNSSTPRLNQSQPASSPSLRCRTITEAASQMNDSPRFQSKSSSNTPRITKSPRVNSASNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGMAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLAAQQSHTNHSNGNDNSKQMENPPPVFRTKNLNQSQHHQQHQQQSESTRSYDDDEPLLSSSAGGGRIITIPEVDENVEDDEDDNDNGEFQGFFVNTKSTSSNKSHSDDIQSGDGDSRTVQVKLMPECAVVSVSRTHETYALVLKVKAPPPLRGGTSTLDPSRRAPIDLVTVLDIGGSMTSAKLQMLKRAMRLVISSLGPADRLSIVAFSSISKRLLPLRRMTAQGQRMARRIIDRLVTGEGNGLGEALRKATRVLEDRRERNPVCSVMLLSDGQDEKVHNSNKQNQRKTFSHASSTRFAHIEIPVHAFGFGSKTGYSHEPGEDAFAKCVGGLLSVVVQDLRIQLGFQSDSARAEISAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPLSTLGTGTNHVMTVRCLYKDPASQEIVYGREQGLTVQLHNQNQFQTVRSSQTRIERLRNLFITTRAIAESRRLLDHNSDFTSAQHLLSSARALLIQSGSASAEQYVRGLEAELAELHWRRQQEQVQVEAQQQQMVQRRRGVEREMNSNMVDENGEPLTPTSAWRAAEMLAKMAMVKKSLNKVSDLHGFENARF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00336 772 MobiDBLite consensus disorder prediction 21 111 - -
Vivi3g00336 772 SMART ring_2 127 171 IPR001841 -
Vivi3g00336 772 MobiDBLite consensus disorder prediction 1 111 - -
Vivi3g00336 772 MobiDBLite consensus disorder prediction 189 232 - -
Vivi3g00336 772 SMART VWA_4 351 537 IPR002035 -
Vivi3g00336 772 MobiDBLite consensus disorder prediction 275 302 - -
Vivi3g00336 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 182 IPR013083 -
Vivi3g00336 772 ProSiteProfiles VWFA domain profile. 353 498 IPR002035 -
Vivi3g00336 772 SUPERFAMILY vWA-like 351 526 IPR036465 -
Vivi3g00336 772 CDD vWA_C3HC4_type 352 523 - -
Vivi3g00336 772 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Vivi3g00336 772 MobiDBLite consensus disorder prediction 189 302 - -
Vivi3g00336 772 Gene3D von Willebrand factor, type A domain 353 517 IPR036465 -
Vivi3g00336 772 SUPERFAMILY RING/U-box 121 178 - -
Vivi3g00336 772 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 125 767 - -
Vivi3g00336 772 Pfam von Willebrand factor type A domain 353 497 IPR002035 -
Vivi3g00336 772 Pfam RING-like zinc finger 127 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00336 Vivi-Chr3 5950051 5953188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00336 119 268 C3H Transcription Factor Family AT3G03550 26.250 2.91e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00336 - - vvo:131660149 1394.79