Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00320 ATGTTCACCACCAAACTCCTCTCTCTTCTTCTTCTTCTCTTCTCATTCTTCCTCACACATGCCAAATCAAACGAACTCGAAACTCTACTTAACATAAAATCCTCATTCCCAAACTCCAACTCCAAACCCTTCTTCAACTCATGGAATCCCAACCGTCTCATTTGCACTTTCCACGGAATCACCTGCAACTCCCTCAACTCCTCCGTCACAGAAATAAACCTCTCCCACAAAAACCTCACCGGAACCCTCCCTCTAGACTCCCTCTGCAGCCTCCCCTCCCTCACCAAACTCGTCTTCGGTTTCAACCTCCTCCATGGCAAACTCAATCAAACCCTCCAAAACTGCACAAACCTACACTTCTTAGATTTAGGAAACAACTTCTTCAACGGACCTTTTCCAGATATTTCACCTCTCAACAAACTTCAATATCTCTACGTTAACAAAAGCGGTTTCTCTGGAACTTTTCCTTGGCAGTCTCTGTTAAACATGACTGGACTATTACAGTTAAGCGTCGGAGATAACCAGTTCGATCTAACGCCGTTTCCTAAAGAAATCTTAAGTCTCAAGAAACTTAATTGGCTTTACATGAGTAACTGTAACATAGGAGGAAATTTACCGGCTGGAATCGGTAACTTGACGGAGTTAACCGAATTAGAATTCTCCGATAATTTCATCACCGGAGAACTTCCAGGAGATATTGTCAATCTTCGAAAACTCTGGCAGCTTGAATTCTATAACAATTCATTAACCGGAGAGCTTCCGGTTGGTTTGAGAAACTTAACCGGACTGATAAACTTCGATGGATCAATGAATCAGCTAGAAGGAAATCTCTCTGAGATAAGATTCTTAACTAATCTGGTTTCGCTGCAATTCTTCGAAAACAAATTCTCCGGTGAGATACCGGCGGAGTTAGGCGAGTTCAAACGGTTAAACGGTTTGTCTCTTTATAGAAACAGATTAACAGGTCCGATTCCTCAGAAGATTGGTTCGTGGACGAAGTTTAGATTCATCGACGTTTCGGAGAATTTCTTAACCGGTTCTATTCCTCCGGATATGTGTAGCAAAGGAAACATGACGGAGCTTCTCGTGCTTCAGAACAATCTCACCGGAGAGATACCGGAAACTTACGGTAGCTGTTTAACTTTGAAACGATTGAGAGTGAGTCGAAACTCGCTTTCCGGTACCGTACCTTCGAGTATTTGGGGATTACCTAAGGTTGAAATTATTGATATTGAAATGAATCAGATAGAAGGTTCTGTGAGTTCTGAAATCCAGAATGCGAAAAAATTGGCAAGTATTTTCGCAAGGAGTAATCGGTTAACCGGTGAAATACCGGAAGAAATTACGAAATCGACGACGTTGGTGACGATTGATCTTAGCGAGAATCAAATTTCTGGGAAGATTCCAGAAAGAATTGGTGAACTGAAACATCTTGGTAACCTTCATCTACAACATAACATGTTATCAGGAGTTATTCCGGAATCTTTGGGTGATTGTAACTCTCTCAATGACGTTGATCTATCGAGAAATTTACTTTCCGACGAAATTCCGTCGTCTTTGGGTTTGTTACCGTCTTTGAATTCATTGAATTTCTCTGGTAATGAACTTTCCGGTGAGATACCAGAGAGTTTAGGTTCGCTTCGGTTGAGTCTCTTTGATCTTTCGCATAATCGATTATCTGGTAAAATTCCTCAGGGCTTGACTATTCAGGCCTATAATGGAAGTCTGACCGGAAACCCGGGTTTATGCACTCTCGACGGTATTGGTTCCTTCCGGCGTTGCTCGGAGAGTGGTGGAATGTCGAAAGATGTTCGTGCTCTTGTACTTTGTTTTACAATAGGTTTGGTTTTGGTTCTTTCTTTTGTGGGGGTTTATTTAAAGTTGAGGAGAATGAAGGAGAAAGAGGTAAATGGAGAGGGAAAAAAATATGGAAGGGAACGTTCTTTGAAGGAAGAATCATGGGATGTGAAATCGTTCCATGTGATGAGTTTCAGTGAAGATGAGATTCTTGATTCAATAAAGCAAGAGAATCTAATCGGAAAAGGAGGTTCAGGGAATGTTTATAGAGTCACACTTGCAAACGGAAAAGAACTCGCGGTTAAGCATATATGGAACACTGATTTCGGTTCAAGGAAAAAGTCGTGGAGTACTACTCCGATGCTGGCGAAACGCGGAGGTGGTGGTGGTTCGAAGTCGAGGGAGTTTGACGCAGAGGTTCAGTCGTTGAGTTCGATAAGGCACGTCAATGTGGTGAAGCTTTACTGCAGTATAACGAGCGAGGACTCGAGTTTACTGGTGTACGAGTATTTGCCGAATGGAAGTTTGTGGGATAGGCTTCATACTAATGGGAAGATGGAGCTTGATTGGGAAACAAGATATGAAATTGCGGTTGGTGCTGCTAAAGGGTTGGAGTATTTGCATCATGGGTGTGAAAGGCCTGTGATTCATAGAGATGTTAAGTCTAGTAACATTTTGTTGGATGAGTTTTTGAAACCTAGGATTGCTGATTTTGGTCTTGCTAAGATTGTTAATGCCAATGTTGTTAAGGATTCTACTCATATCATCGCTGGAACTCACGGCTACATCGCTCCCGAATATGGTTACACATACAGAGTGAATGAGAAAAGTGATGTGTATAGTTTCGGAGTCGTGTTGATGGAGCTGGTAACCGGTAAAAGGCCAAGTGAGACAGAGTTTGGAGAAAACAAGGATATAGTTAGTTGGGTTCATGGGAAGACAAGGAGCAAGGAGAAGTTTATGAGTGTGGTGGATTCGAGAATTCCGGAGATGTATAAAGAGGAAGCTTGTAAGGTTTTGAGAACTGCAGTTCTTTGTACTGCAACTCTTCCTGCTATGAGACCAAGTATGAGAAGTGTGGTTCAACAGCTTGAAGATGCTGCACCTTGTAAATTGGTTGGAATTGTTATCGGTAAAGATGGAAGTGAAAAGAAATTTGGAGTCAATGACAAATGA 2973 0.4198 MFTTKLLSLLLLLFSFFLTHAKSNELETLLNIKSSFPNSNSKPFFNSWNPNRLICTFHGITCNSLNSSVTEINLSHKNLTGTLPLDSLCSLPSLTKLVFGFNLLHGKLNQTLQNCTNLHFLDLGNNFFNGPFPDISPLNKLQYLYVNKSGFSGTFPWQSLLNMTGLLQLSVGDNQFDLTPFPKEILSLKKLNWLYMSNCNIGGNLPAGIGNLTELTELEFSDNFITGELPGDIVNLRKLWQLEFYNNSLTGELPVGLRNLTGLINFDGSMNQLEGNLSEIRFLTNLVSLQFFENKFSGEIPAELGEFKRLNGLSLYRNRLTGPIPQKIGSWTKFRFIDVSENFLTGSIPPDMCSKGNMTELLVLQNNLTGEIPETYGSCLTLKRLRVSRNSLSGTVPSSIWGLPKVEIIDIEMNQIEGSVSSEIQNAKKLASIFARSNRLTGEIPEEITKSTTLVTIDLSENQISGKIPERIGELKHLGNLHLQHNMLSGVIPESLGDCNSLNDVDLSRNLLSDEIPSSLGLLPSLNSLNFSGNELSGEIPESLGSLRLSLFDLSHNRLSGKIPQGLTIQAYNGSLTGNPGLCTLDGIGSFRRCSESGGMSKDVRALVLCFTIGLVLVLSFVGVYLKLRRMKEKEVNGEGKKYGRERSLKEESWDVKSFHVMSFSEDEILDSIKQENLIGKGGSGNVYRVTLANGKELAVKHIWNTDFGSRKKSWSTTPMLAKRGGGGGSKSREFDAEVQSLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVNANVVKDSTHIIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPSETEFGENKDIVSWVHGKTRSKEKFMSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPSMRSVVQQLEDAAPCKLVGIVIGKDGSEKKFGVNDK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00320 990 CDD STKc_IRAK 679 964 - -
Vivi3g00320 990 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 770 976 - -
Vivi3g00320 990 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vivi3g00320 990 FunFam Receptor-like protein kinase 7 108 355 - -
Vivi3g00320 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Vivi3g00320 990 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Vivi3g00320 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 356 444 - -
Vivi3g00320 990 ProSitePatterns Protein kinases ATP-binding region signature. 679 701 IPR017441 GO:0005524
Vivi3g00320 990 FunFam Receptor-like protein kinase HAIKU2 656 769 - -
Vivi3g00320 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 469 588 - -
Vivi3g00320 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 209 964 - -
Vivi3g00320 990 Gene3D Ribonuclease Inhibitor 308 590 IPR032675 -
Vivi3g00320 990 SMART serkin_6 673 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00320 990 Pfam Protein kinase domain 675 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00320 990 SUPERFAMILY RNI-like 279 586 - -
Vivi3g00320 990 Gene3D Ribonuclease Inhibitor 180 282 IPR032675 -
Vivi3g00320 990 Gene3D Phosphorylase Kinase; domain 1 656 769 - -
Vivi3g00320 990 ProSiteProfiles Protein kinase domain profile. 673 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00320 990 Gene3D Transferase(Phosphotransferase) domain 1 770 971 - -
Vivi3g00320 990 SUPERFAMILY Protein kinase-like (PK-like) 664 963 IPR011009 -
Vivi3g00320 990 SUPERFAMILY L domain-like 47 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00320 Vivi-Chr3 5575075 5578448 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00320 11 983 Receptor kinase-like Gene Family AT1G09970 59.202 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi3g00320 Pkinase 6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00320 - - gmx:100809356 1480.31