Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00318 ATGACTCACTTCTTTAGACTCATACTTCTCATTTTCATCACAAACTTATCACATGCTATCACTACAAACCAAACTCAGTTTTTTTCTGTCATGAAAGACTCTCTCTCAGGAAACTATCCTTTTGATTGGGGCGCAAGCAAAGTCGAAAAACCAGTATGTGATTTCACCGGAATCACATGCGATGACAAAGGCGATATTATAAAACTCGATTTTTCAGGTTGGTCGTCTCTCTCCGGAAACTTCCCTACAGATTTTTGTACTTACCTTCCAAATTTACGCGTCCTAAACCTCGGTAACACAAAGCTCAAGTTTCCAATACACGACATAATCAACTGTTCTAAACTAGAACAGTTGATCATGAACCAGATGCACCAGTCAGGAGCACTTCCCGATTTCTCATCTCTAAAATCTCTCAGAATCCTCGACTTATCATACAACTCCTTCACCGGGGACTTCCCTATGTCAGTTTTCAATCTCACAAACCTCGAAATTCTCAACTTCAATGAAAACAATGGTTTTGATCTCTGGGAATTACCAAAAAGCTTTGAAAGATTGAAAAATCTCAAGTCCATGGTTTTATCAACATGCATGCTGCATGGTCAAATTCCACCATCCATATCGAACATAACATCTCTCATTGATCTTGAATTGAGTGGAAATTTCCTCACAGGCCAAATTCCAAAAGAACTCGGTCTGTTGAAAAACTTGCAACAGCTTGAACTTTACTATAACTACCACCTTGTTGGTAACATTCCAGAAGAGCTCGGAAACTTAACCGAACTAATCGATTTAGATATGTCGGTTAACAAGCTAACCGGAACCATCCCTTCTTCTGTTTGTAAGCTTCCTAAGCTTCAAGTTCTTCAGCTGTACAACAACAGTCTCACAGGTCAAATACCGGACGAAATCGAAACCTCGACAACACTCAGAATGTTATCGCTTTACGACAATTTCCTAAGCGGACATATTCCGAAGAAACTAGGCCAGTTCTCAGGAATGGCTCTTGTTGATTTGTCTGAAAACAAACTGTCTGGTCCTTTACCAGAACATGTCTGTGAAGGAGGTAAACTGTTATATTTTCTTGTTTTGGATAACTTTCTATCTGGTTTTATACCAGAAAGTTACGCGAACTGCGTGTTTCTGTTACGGTTTCGTGTCAGTAATAACCGGTTACAAGGTTCAGTTCCAAAAGGACTATTGAGTTTACCTCATGTTTCAATCATTGATTTGAGTAGTAACAATTTAACCGGCCCGATTCCCGAGATCAACGGAAACTCGAGAAACCTGTCCGAACTTTTCCTTCAGAGGAACAAGATTTCAGGAGAGATAACACCAACAATCTCTAGAGCTTATAGCCTTGTCAAAATTGATTTCAGTTATAACTTTCTTTATGGTCCAATCCCTTCTGAGATTGGTAACCTTAGAAAGCTTAACTTGCTTATGCTGCAAGGTAACAAGTTGAACTCTTCTATTCCTGGTTCACTTTCTTCTTTGGAGTCACTCAACCTTCTTGATCTTTCGAATAATCTCTTAACGGGAAACATCCCCGAAAGCCTATCGGTGTTGTTGCCGAATTCGATTAACTTCTCACACAATCTTCTTTCTGGTCCAATTCCTCCTAAGCTGATTAAAGGAGGTTTAGTTGAAAGCTTTGCAGGAAATCCTGGTTTATGCGTGGTGATTCCGGTGTATGCGAATTCGTCTGATCAAAAGAACTTTCCACTATGTTCACATGGTTACAAGAGTAAGAAGATGAACACTATCTGGGTGGCTGGTGTGTCTGTGATATTGATTTTTGTAGGAGCTGCTTTGTTCTTGAAGAAAAGATGCAGCAAAGACGCGGCTGCAGTCGAGCACGAAGACACTCTCTCTTCATCCTTTTTCTCTTATGATGTCAAGAGCTTTCACATGATAAGTTTTGATCAAAGAGAGATTGTTGAGTCTTTGGTTGATAAGAACATTATGGGACATGGAGGGTCAGGGACAGTATACAAAATCGAGCTGAAGAGTGGCGATGTTGTCGCGGTTAAACGCCTTTGGAGCCGAAGCTCGAAGGACTCGTCGCCCGAGGACGCGTTATTCGTGGACAAAGCATTGAAAGCTGAGGTGGAAACATTAGGAAGCATAAGGCACAAGAACATAGTTAAGTTATATTGTTGCTTCTCAAGTTTGGATTGTAGTTTGTTGGTTTATGAGTACATGCCAAATGGTACTTTGTATGATTCACTTCACAAGGGTTGGATTCATTTGGATTGGCCTACAAGGCATAGGATTGCACTTGGAATTGCTCAAGGTCTTGCATACCTTCATCATGATTTGGTCTTTCCTATTATCCATAGAGATATTAAGTCAACTAATATTCTCTTGGATGAAGATTATCATCCTAAGGTTGCTGATTTTGGGATTGCTAAGGTTTTGCAAGCAAGAGGTGGAAAGGATTCCACAACCACTGTTATTGCAGGAACTTATGGTTACCTAGCACCAGAATATGCATATTCGCCAAGGGCCACAACAAAGTGTGATGTGTACAGTTTTGGTGTGATTTTGATGGAATTGTTAACCGGGAGAAAGCCAATAGAGTCAGAGTTTGGAGAAAACAGAAACATTGTCTTTTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGAGCTAGACCAAGTGAAGTTTTTGATCCAAAGCTATCATGTTCATTCAAAGATGACATGGTTAAAGTTTTGAGAATTGCGATCCGATGCAGTTACAAAGCGCCGGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAACCAAAGAGTTCTGATTCTTGCAAGTTGTCAACTAAAGAAGTATCAACAAATGTTAATTTAATAAAGAAACCATTTGAGTTATAG 2883 0.3999 MTHFFRLILLIFITNLSHAITTNQTQFFSVMKDSLSGNYPFDWGASKVEKPVCDFTGITCDDKGDIIKLDFSGWSSLSGNFPTDFCTYLPNLRVLNLGNTKLKFPIHDIINCSKLEQLIMNQMHQSGALPDFSSLKSLRILDLSYNSFTGDFPMSVFNLTNLEILNFNENNGFDLWELPKSFERLKNLKSMVLSTCMLHGQIPPSISNITSLIDLELSGNFLTGQIPKELGLLKNLQQLELYYNYHLVGNIPEELGNLTELIDLDMSVNKLTGTIPSSVCKLPKLQVLQLYNNSLTGQIPDEIETSTTLRMLSLYDNFLSGHIPKKLGQFSGMALVDLSENKLSGPLPEHVCEGGKLLYFLVLDNFLSGFIPESYANCVFLLRFRVSNNRLQGSVPKGLLSLPHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGEITPTISRAYSLVKIDFSYNFLYGPIPSEIGNLRKLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGNIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVVIPVYANSSDQKNFPLCSHGYKSKKMNTIWVAGVSVILIFVGAALFLKKRCSKDAAAVEHEDTLSSSFFSYDVKSFHMISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDVVAVKRLWSRSSKDSSPEDALFVDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLYDSLHKGWIHLDWPTRHRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAIRCSYKAPASRPTMKEVVQLLIEAEPKSSDSCKLSTKEVSTNVNLIKKPFEL 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00318 960 FunFam receptor protein-tyrosine kinase CEPR1 632 733 - -
Vivi3g00318 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Vivi3g00318 960 Gene3D Ribonuclease Inhibitor 279 572 IPR032675 -
Vivi3g00318 960 SMART LRR_typ_2 474 497 IPR003591 -
Vivi3g00318 960 SMART LRR_typ_2 135 159 IPR003591 -
Vivi3g00318 960 SMART LRR_typ_2 498 522 IPR003591 -
Vivi3g00318 960 SMART LRR_typ_2 282 306 IPR003591 -
Vivi3g00318 960 SMART LRR_typ_2 89 112 IPR003591 -
Vivi3g00318 960 SUPERFAMILY L domain-like 66 348 - -
Vivi3g00318 960 Gene3D Ribonuclease Inhibitor 25 174 IPR032675 -
Vivi3g00318 960 SUPERFAMILY Protein kinase-like (PK-like) 633 929 IPR011009 -
Vivi3g00318 960 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Vivi3g00318 960 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 947 - -
Vivi3g00318 960 SUPERFAMILY L domain-like 249 561 - -
Vivi3g00318 960 FunFam Leucine-rich repeat receptor-like protein kinase 175 278 - -
Vivi3g00318 960 FunFam Receptor protein-tyrosine kinase CEPR1 282 569 - -
Vivi3g00318 960 Gene3D Transferase(Phosphotransferase) domain 1 734 955 - -
Vivi3g00318 960 Gene3D Ribonuclease Inhibitor 175 278 IPR032675 -
Vivi3g00318 960 ProSiteProfiles Protein kinase domain profile. 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00318 960 Pfam Protein kinase domain 651 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00318 960 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 930 - -
Vivi3g00318 960 SMART serkin_6 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00318 Vivi-Chr3 5463884 5467518 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00318 21 935 Receptor kinase-like Gene Family AT5G49660 64.200 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi3g00318 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00318 - - gmx:100808284 1551.18