Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00286 ATGGCCATCGCAACAGAGTCTCATCAATCTCACCCTCAACAACACACGGCTTCTTCGGAGTATTCAGGTTCAGCTCAGGAGCAAAAGAGATGGACATTGAATGATTTTGATATTGGAAAACCTCTTGGAAGGGGAAAATTCGGCCATGTCTATTTGGCCAGAGAAAAAACTAGTAATCATATTGTTGCTTTGAAAGTACTCTTTAAGACTCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGCCGAGAAGTTGAAATACAGAGTCATCTGAGACATCCCCATATATTGCGACTTTATGGATACTTTTATGATCAGAAAAGAGTGTATTTGATTTTAGAGTATGCACCTAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAGTATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCGTCATTGGCCCGAGCCCTTATATATTGCCATGGAAAGCATGTAATTCATAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCTCAGGGTGAATTGAAGATTGCGGATTTCGGATGGTCGGTACACACATTCAACCGCAGGAGGACCATGTGCGGCACCCTGGATTACCTTCCACCCGAGATGGTGGAGAGTGTAGAACATGATGCAAGTGTTGATATATGGAGCCTTGGTGTTCTTTGCTATGAGTTTCTTTACGGAGTCCCCCCTTTTGAGGCCAAAGAACATTCTGATACTTATAGAAGGATAATACAAGTGGATCTCAAGTTCCCTCCTAAACCGATTGTTTCTTCTGCTGCGAAAGACCTCATCAGCCAGATGCTGGTTAAGGATTCCTCTCAACGACTACCGTTGCACAAACTGCTAGAACATCCTTGGATTGTTCAGAATGCAGAGCCCTCCGGTATATACAGGAGCTAA 900 0.43 MAIATESHQSHPQQHTASSEYSGSAQEQKRWTLNDFDIGKPLGRGKFGHVYLAREKTSNHIVALKVLFKTQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGIYRS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00286 299 FunFam Aurora kinase A 28 119 - -
Vivi3g00286 299 Gene3D Transferase(Phosphotransferase) domain 1 120 296 - -
Vivi3g00286 299 FunFam serine/threonine-protein kinase Aurora-1 120 295 - -
Vivi3g00286 299 CDD STKc_Aurora 35 288 - -
Vivi3g00286 299 Gene3D Phosphorylase Kinase; domain 1 23 119 - -
Vivi3g00286 299 Pfam Protein kinase domain 38 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00286 299 PIRSF ILK 3 284 - -
Vivi3g00286 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vivi3g00286 299 SMART serkin_6 36 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00286 299 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g00286 299 ProSiteProfiles Protein kinase domain profile. 36 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00286 299 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 295 IPR030616 GO:0004672
Vivi3g00286 299 SUPERFAMILY Protein kinase-like (PK-like) 16 291 IPR011009 -
Vivi3g00286 299 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00286 Vivi-Chr3 4771094 4773689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00286 11 290 CBL-interacting serine-threonine protein kinases AT5G25110 34.266 9.04e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vivi3g00286 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00286 K08850 - gmx:100803678 580.867