Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00279 ATGTCTGAACTACCCTTCTTTGTATTGAAATTTCCCATTTATTTGATCCTCTTGCTAAACTTCATAATACCCTTTAAGGTAATTTCACAGACAAGCTCCGAAGAAACCATACTTCTTAGTCTTAAACGTCAACTCGGTGATCCACCGTTGCTCCAGTCATGGAAACCGTCACCGTCTTCGCCGTGCAACTGGCCGGAGATCAATTGCACCGGTGGCTCCGTCACGGAGCTTCTCCTCCTAAACCAAAACATCACCATACAGAAACTCCCTTCCATCATCTGCAACCTAAAGAATCTCACTAAGCTTGACCTCTCCAACAACTCCATCGCCGGCGAGTTTCCGACGTGGATGTCCAACTGCTCCATCCTCTTATACCTCGACTTGTCGCAGAACTACCTCGCCGGTCAAATCCCCGACGACATCGGTAACCTCGAAAAACTCACCTATCTCAACCTCGCCGGCAACAGCTTCACCGGCGATATCCCGGCGGCGATCGGAAGACTCTCGAACCTTCAAACACTTTACCTCTTTCAAAACAACTTCAACGGAACCATTCCGAAGGAAATCGGAGACTTATTGAATCTCGAAACCCTCGGTTTAGCTGATAACTTTCGACTCAAACCAATGACAATTCCGTTGGAGTTCGGAAAATTGAAGAACTTGAAATTCATGTGGATTTCGAAGTGTAACTTGATCGGAACCATTCCAGAAAGCTTCGCGAATCTCACGAATCTCGAACATTTGGATTTATCAGCCAACAATTTAACAGGAAACATACCTAGAAGTTTCTTCTCGCTCAAGAAATTGACCTATTTGTATCTTTACCATAATAGGTTTATTGGTGTGATACCTGATTCAGTTCAGGCTTTGAATTTAACCGAAATCGATTTGTCGATGAACAATTTAACTGGTTCGATACCAAAAGAGTTTGGTATGTTACAGAATTTGACTGTTTTGCAATTGTTTTCGAATCAGTTAACTGGTGAGATTCCTAGCAGTTTAGGGCTAATTCCAAGTTTGAGGCAATTTAAGGTTTTTGAAAATAAGTTGAATGGAACACTACCTTCAGAGTTAGGAAGGTATTCAAAGCTTGTGATTTTTGAAGTTGGTGCAAATCAACTCATTGGTGGGTTGCCAGAACATTTGTGTGATGGTGGTGTTTTGTTGGGTGTAACTGCTTTTCTGAATAATCTCAGTGGAAAGTTACCAAATTGGTTTGAGAATTGTGTTTCTCTTACCACAGTTGAGCTTTACAGTAACAGATTTTCAGGGGAAGTTCCTTTGGGTTTGTGGAATTTGACGAAATTGTCGACGTTGATGTTAAGTGATAACTTGTTTTCGGGTGAACTTCCGAGTAGTTTATCATGGAACATGTCTAGACTTGAGATTAGAAACAATAATTTTTCAGGTCAGATATCTCTTGGAGTTTCTTCTGCTTTGAATTTGGTGGTTTTTGATGCAGGAAACAACTTGTTTTCTGGTGAGCTTCCGAGGAAATTAACGGGTTTATCGCAGCTCACTACTCTCATGCTTGATGGTAATCAACTCTCTGGAACACTTCCGTCTGAAATAATATCGTGGCGATCGCTTAATACTCTAAATATCTCGAGAAACAAAATTACGGGTCGAATACCTGTAGCTTTGTCTTCTCTTCCAAGCCTTAATTACTTGGATTTATCTGAAAATAACATAACCGGCGAAATCCCACCTCAGCTTGTGAATTTGAAGCTTAATTTTCTTAACTTGTCTTCCAACAAGCTTACTGGGAACATCCCTGATGATTTTGAGAATCTTGCTTATGAATACAGTTTCTTGAACAATCCTCAACTATGTGCACATGATGAAAAATTCAACCTTTCAAGCTGCTTGACAAAAACCACACCACAACACTTCAGAAATCATTCATCTTTGAAATCAAAACTTGTTGCTTTGAGTCTTGCTGTTACCGTTGCTGTGCTGCTGGCCACAGCTTTTTTGGCCTTCTGCGCGTTGAAAAAGCATTGCGGCAAAAAGCACTGCGGGCGTAAGCTTTCAACATGGAGGCTTACATCATTCCAGAGATTTGATCTCACGGAAATAAATATATTCTCAAGTTTGACAGATAATAACCTCATAGGAAGTGGAGGGTTTGGAAAAGTTTACCGGGTAGCTTCAACTCGTCCCGGTGAGTACGTTGCAGTGAAGAAGATTTGGAACGTCAAAGATGTGGATGACAAACTTGATAAAGAATTCATGGCTGAGGTTGAAATTCTGGGCAATATTAGGCATTCCAATATAGTGAAACTTTTGTGTTGTTATTCAAGTGAGAACTCTAAACTTCTTGTTTATGAATACATGGAAAATCATAGCCTAGACCAATGGCTTCATAAAAAGAAGAAAACGTCAGTTTCGGGGTTGAGTTCACTCACTGAGAATCAAATGGTTTTGAGTTGGCCAACAAGGTCAGACATTGCCATTGGTGCTGCACAAGGCCTGTGTTACATGCATCATGAATGTTCAATGCCAATCATTCACAGGGACGTCAAATCGAGCAATATATTGCTTGACTCTAAGTTCAAGGCATGTATAGCAGATTTTGGGCTCGCCAAGATGTTGGCGAAGAATGGGGAACCATACACCATGTCTGTTCTAGCGGGGTCTTTCGGCTACATTCCACCAGAATATGCATATTCTACCAGGATTGATGAGAAAGTCGATGTGTATAGCTTTGGAGTTGTACTACTAGAGCTGGTGACGGGAAGGGAGCCTAATTATGGTGGCGAGAATGCGTGCAGCCTGGTTGATTGGGCATGGCGGCATTGTGATGAAGGAAACTGTATCACTGATGCCTTTGATGAGGATATCAGAGAAACGCCCTATGCAGCAGAGATGACTAGCGTCTTCAAATTAGGTCTCATGTGCACAAGTACATTACCCTCCACTAGGCCTTCAACAAAGGAGATTCTACAAGTTCTTCGGCAGTGTTGTTCTTCGAGTTCTGCGCATAGAAGAGTGGCAACTGAATTTGATATCACTCCTCTTCTTGGCAATAGAACTTACATTTCTAGTTACAAGGATGGTAGGACTGTTAATGAAAATGAAGAAAGCTGCTTATATAGTGTGTAA 3105 0.4145 MSELPFFVLKFPIYLILLLNFIIPFKVISQTSSEETILLSLKRQLGDPPLLQSWKPSPSSPCNWPEINCTGGSVTELLLLNQNITIQKLPSIICNLKNLTKLDLSNNSIAGEFPTWMSNCSILLYLDLSQNYLAGQIPDDIGNLEKLTYLNLAGNSFTGDIPAAIGRLSNLQTLYLFQNNFNGTIPKEIGDLLNLETLGLADNFRLKPMTIPLEFGKLKNLKFMWISKCNLIGTIPESFANLTNLEHLDLSANNLTGNIPRSFFSLKKLTYLYLYHNRFIGVIPDSVQALNLTEIDLSMNNLTGSIPKEFGMLQNLTVLQLFSNQLTGEIPSSLGLIPSLRQFKVFENKLNGTLPSELGRYSKLVIFEVGANQLIGGLPEHLCDGGVLLGVTAFLNNLSGKLPNWFENCVSLTTVELYSNRFSGEVPLGLWNLTKLSTLMLSDNLFSGELPSSLSWNMSRLEIRNNNFSGQISLGVSSALNLVVFDAGNNLFSGELPRKLTGLSQLTTLMLDGNQLSGTLPSEIISWRSLNTLNISRNKITGRIPVALSSLPSLNYLDLSENNITGEIPPQLVNLKLNFLNLSSNKLTGNIPDDFENLAYEYSFLNNPQLCAHDEKFNLSSCLTKTTPQHFRNHSSLKSKLVALSLAVTVAVLLATAFLAFCALKKHCGKKHCGRKLSTWRLTSFQRFDLTEINIFSSLTDNNLIGSGGFGKVYRVASTRPGEYVAVKKIWNVKDVDDKLDKEFMAEVEILGNIRHSNIVKLLCCYSSENSKLLVYEYMENHSLDQWLHKKKKTSVSGLSSLTENQMVLSWPTRSDIAIGAAQGLCYMHHECSMPIIHRDVKSSNILLDSKFKACIADFGLAKMLAKNGEPYTMSVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGREPNYGGENACSLVDWAWRHCDEGNCITDAFDEDIRETPYAAEMTSVFKLGLMCTSTLPSTRPSTKEILQVLRQCCSSSSAHRRVATEFDITPLLGNRTYISSYKDGRTVNENEESCLYSV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00279 1034 Pfam Protein kinase domain 701 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00279 1034 ProSitePatterns Protein kinases ATP-binding region signature. 705 729 IPR017441 GO:0005524
Vivi3g00279 1034 SUPERFAMILY L domain-like 41 378 - -
Vivi3g00279 1034 FunFam Receptor-like protein kinase HSL1 isoform A 31 183 - -
Vivi3g00279 1034 SUPERFAMILY Protein kinase-like (PK-like) 691 985 IPR011009 -
Vivi3g00279 1034 Pfam Leucine rich repeat 528 587 IPR001611 GO:0005515
Vivi3g00279 1034 Pfam Leucine rich repeat 226 279 IPR001611 GO:0005515
Vivi3g00279 1034 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Vivi3g00279 1034 PRINTS Leucine-rich repeat signature 99 112 - -
Vivi3g00279 1034 PRINTS Leucine-rich repeat signature 242 255 - -
Vivi3g00279 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 385 457 IPR032675 -
Vivi3g00279 1034 SUPERFAMILY RNI-like 291 599 - -
Vivi3g00279 1034 SMART LRR_typ_2 433 457 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 242 266 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 168 192 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 313 337 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 503 527 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 551 575 IPR003591 -
Vivi3g00279 1034 SMART LRR_typ_2 96 120 IPR003591 -
Vivi3g00279 1034 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 283 - -
Vivi3g00279 1034 PANTHER UNNAMED PRODUCT 210 917 - -
Vivi3g00279 1034 FunFam Receptor-like protein kinase HSL1 679 778 - -
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 186 288 IPR032675 -
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 289 384 IPR032675 -
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 458 544 IPR032675 -
Vivi3g00279 1034 ProSiteProfiles Protein kinase domain profile. 699 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00279 1034 ProSiteProfiles Leucine-rich repeat profile. 553 576 IPR001611 GO:0005515
Vivi3g00279 1034 Gene3D Phosphorylase Kinase; domain 1 682 778 - -
Vivi3g00279 1034 Gene3D Ribonuclease Inhibitor 545 648 IPR032675 -
Vivi3g00279 1034 ProSiteProfiles Leucine-rich repeat profile. 244 266 IPR001611 GO:0005515
Vivi3g00279 1034 FunFam Leucine-rich repeat receptor-like protein kinase TDR 310 624 - -
Vivi3g00279 1034 Gene3D Transferase(Phosphotransferase) domain 1 779 1004 - -
Vivi3g00279 1034 SMART serkin_6 699 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00279 1034 FunFam Kinase family with leucine-rich repeat domain-containing protein 779 1001 - -
Vivi3g00279 1034 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00279 Vivi-Chr3 4719228 4722630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00279 23 1012 Receptor kinase-like Gene Family AT5G25930 54.965 0.0 1031
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi3g00279 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00279 - - adu:107461025 1388.24