Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00265 ATGGCTTACGAGAACGGTTCTGTCGGTGGTGGTGTTAAGGATCTATATGGTGAAGATAGAGCTACAGAAGATCAAACTATCACACCATGGAGTTTCTCTGTTGCTAGTGGAAGCACTTTGCTCAGAGATCCACGTTACAACAAAGGACTTGCTTTCACTGAGAAAGAAAGAGATGCTCATTACGTTCGTGGCCTTTTGCCTCCTGCTCTTTTCACTCAAGATCTTCAGGAAAAGAGATTAATGCATAATCTTCGCCAATATGATGTTCCTCTTCATAGGTATATAGCCTTGATGGATCTTCAGGAGAGGAATGAGAGGCTGTTTTACAAGGTTCTTATCAATAATGTCGAGGAATTGCTTCCTGTTGTTTACACTCCAACTGTTGGTGAAGCATGTCAGAAATATGGAAGCATTTTTAGGCGTCCTCAGGGTTTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAGGTTCTTAAGAACTGGCCTGAAAAAACTATTCAAGTTATTGTTGTGACCGATGGTGAACGTATTCTAGGACTAGGAGATCTTGGTTGCCAGGGAATGGGAATTCCTGTTGGGAAGCTTTCTCTATATACTGCATTAGGAGGTGTTCGTCCTTCATCGTGCTTGCCTATAACGATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGACGAGTTTTACATTGGCCTTCGACAGAAGCGTGCAACTGGGAAGGAATACGCGGAGCTTCTAGACGAGTTTATGCATGCAGTTAAGCAGAACTATGGAGAGAAAATTCTTGTGCAGTTCGAAGATTTCGCCAATCATAATGCGTTCGATCTTCTGGATAAATACAGCTCGTCACATCTTGTTTTCAATGATGATATACAGGGTACAGCTTCTGTGGTATTAGCAGGATTGCTTGCTTCCCTTAAGTTAATCGGAGGAACCTTAGCTGACCACACATTCTTATTCTTGGGAGCTGGAGAGGCTGGAACTGGTATAGCAGAGTTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCCCCTGTTGAAGAGACTCGCAAGAAGATCTGGCTTGTGGACTCCAAGGGTCTTATTGTTAGCTCTCGTCTGCAATCTCTTCAGCACTTCAAAAAGCCTTGGGCTCATGATCATGAACCTGTGAAGGAGCTTCTAGATGCTGTCAAGGCAATTAAGCCGACCGTATTGATTGGATCATCTGGAGTAGGAAAGACATTTACCAAGGAGGTTGTTGAAACCATGGCATCCTTGAATAAGAAACCTCTCATTCTTGCACTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATTTTTGCTAGTGGAAGTCCATTCGATCCTGTTAAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGCCAACAATGCTTACATCTTTCCTGGCTTGGGTTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGCGACGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAGGTATCACAGGAGAACTATGATAAGGGGCTGATTTACCCTCCATTCACAAATATCAGAAAGATATCAGCCAACATTGCTGCCAGTGTTGCGGCTAAGACATATGAACTTGGTCTAGCTTCTCATTTACCTCGACCAAAGGATCTTGTCAAATACGCAGAAAGTTGCATGTATAGCCCAGGCTATAGAAGCTACCGTTAA 1731 0.4339 MAYENGSVGGGVKDLYGEDRATEDQTITPWSFSVASGSTLLRDPRYNKGLAFTEKERDAHYVRGLLPPALFTQDLQEKRLMHNLRQYDVPLHRYIALMDLQERNERLFYKVLINNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLDEFMHAVKQNYGEKILVQFEDFANHNAFDLLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLIGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLQSLQHFKKPWAHDHEPVKELLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNKKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVKYEGKVFVPGQANNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAASVAAKTYELGLASHLPRPKDLVKYAESCMYSPGYRSYR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00265 576 FunFam Malic enzyme 290 576 - -
Vivi3g00265 576 PRINTS Malic enzyme signature 107 131 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 203 225 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 263 281 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 288 304 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 167 196 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 422 438 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 PRINTS Malic enzyme signature 319 335 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 Gene3D - 290 576 - -
Vivi3g00265 576 ProSitePatterns Malic enzymes signature. 288 304 IPR015884 GO:0004471
Vivi3g00265 576 PANTHER MALIC ENZYME-RELATED 9 576 - -
Vivi3g00265 576 Pfam Malic enzyme, NAD binding domain 292 543 IPR012302 GO:0051287
Vivi3g00265 576 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 292 575 IPR036291 -
Vivi3g00265 576 Gene3D - 35 289 IPR037062 GO:0004471
Vivi3g00265 576 Pfam Malic enzyme, N-terminal domain 101 281 IPR012301 GO:0004471
Vivi3g00265 576 SMART malic_2 101 282 IPR012301 GO:0004471
Vivi3g00265 576 CDD NAD_bind_1_malic_enz 292 570 - -
Vivi3g00265 576 FunFam Malic enzyme 35 289 - -
Vivi3g00265 576 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 15 291 IPR046346 -
Vivi3g00265 576 PIRSF ME 13 576 IPR001891 GO:0004470|GO:0004471
Vivi3g00265 576 SMART Malic_M_2 292 545 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00265 Vivi-Chr3 4616794 4620647 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00265 K00029 - gmx:100801564 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00265 3 4616794 4620647 Vivi3g00265 3 4616794 4620647 ECH
Vivi3g00265 3 4616794 4620647 Vivi7g03805 7 103944420 103948721 ECH
Vivi3g00265 3 4616794 4620647 Vivi2g07971 2 229567297 229572034 ECH
Vivi5g06289 5 169233234 169237665 Vivi3g00265 3 4616794 4620647 ECH
Vivi7g03805 7 103944420 103948721 Vivi3g00265 3 4616794 4620647 ECH
Vivi2g07971 2 229567297 229572034 Vivi3g00265 3 4616794 4620647 ECH