Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00232 ATGGCCAAAGAAACCCCAACAATGTTTTCGAAGTTACTCGTGTTTATTTGCCTTTTCATGTTCATGCTCAACTTCCACTTATCCCATGGAGAACAACAAGAGTTTGAGCTACTTTTATCCTTCAAGTCATCCATCCACTATGATCCTCATAACTTTCTCTCCAGCTGGGTCAATACTTCCTCAAACACTATTTGCAAATGGCACGGGATAACCTGCGACAACTGGTCGCACGTTAACACCGTGTCACTCTCAGGTAAAAACATCTCCGGTGAGGTTTCCCCGTCCATGTTTCAACTTGCACATGTTACAAACCTTGACCTCTCCAACAATCAGCTTGTTGGAGAAGTCGTCTTCAACGCTCCCTTCCTCTCTTCACTTCTTTACCTCAACCTCAGCAACAACAACTTCACTGGCCCTTTACCTCAATCCTTATTTTCATCACCGTTTATCAACCTCGAAACTCTTGATCTCTCAAACAACATGTTTTCAGGCAGAATACCAGACCAAATTGGATTACTTTCAAGCTTAACATACCTTGACCTAGGTGGCAATGTTTTGGTTGGAAAAATTCCAAATTCCATCACCAACATGACAAGTTTAGAGTCCTTAACTTTAGCTTCAAACCAATTAGTTGGTGAGATTCCAACAGAGATAAGCTTAATGAAGAGATTGAAACTGATTTACTTGGGATACAACAATCTTTCAGGTGAGATTCCAAAGAACATTGGAAACTTACTTTCTTTGAATCAACTTGATCTTGTTTACAACAATCTCTCTGGACCAATTCCTGAATCACTTGGAAACCTCACCAACCTTCGATATCTCTTTCTCTACGTAAACAAACTCACTGGTCCAATACCCAAATCCATATTCAAATTGAAGAATCTTATTTCACTTGATCTCAGTGATAATTATCTTTCCGGAGAGATTCCAAACCTTGTTGTTAACCTTCAGAAACTAGAGATTCTTCAACTTTTCTCAAACAACTTCACCGGTGCCATTCCAAACACAATAACATCATTACCTCACCTTCAAGTTCTTCAACTCTGGTCAAACAAGCTATCCGGTGAAATTCCACAAACACTTGGATTACACAACAACCTCGCAATTCTTGACCTCTCTTCAAACAACCTCACAGGCAAAATCCCAAACAGTTTATGCGCGTCTGAAAATTTTCACAAACTTATCCTCTTTTCAAACTCTCTCAATGGAGAAATCCCAAAGGGTTTAACCTCGTGCAAAACCTTGCAAAGAGTGAGACTCCAAAACAACAATTTGTCAGGGAAATTACCAATGGAAATCACACAATTGCCTCAGATATACTTGCTCGATATCTCCGGAAACAAACTCTCCGGAAGAATCAATGACAGAAAGTGGAAAATGCCATCGCTTCAAATGCTCAATTTGGCTAACAACAATTTCACCGGAGAATTACCAAACTCTTTCGGGAGTAACAAACTCGAAGGATTGGATTTCTCACAGAATCAACTTTCCGGTAACATTCAAATTCATTTCAGAAAATTACCAGAGCTTGTTCAATTGAAACTCAACAATAACAACCTCATCGGAAAAATCCCTGAAGAAATCTTTCAATGCAAGAATCTTGTTTCTTTAGATTTAAGTCATAATCATCTCAGCGGCGAGATTCCGGCGAAACTCGCCGAGATGCCGGTTCTCGGATTACTCGACTTATCGGTGAATCAATTTTCCGGCGAGATTCCAAAGAATTTAGGAAGCGTTGAATCGCTGGTTGATGTTAACATTTCGTATAACAACTTTCATGGAAGTTTACCTTCCACTGAAGCTTTCTTCGCAATCAACGCGAGTTCAGTCGCCGGTAACAAACTCTGTTACCGTGACGGTGACGTTGACGGTAACGGTGTTGTTTCTAACGGTTTGCCACTATGCAAAAGTGATAATCCGATAAATTCAATAACGCTGTTAGTTTTGGTTTGTTTTGTATTAACGGGTTTTGTTGCGTTAAGTGGTGCTGTGATTTTCGTGATTTTCGTGCGGAGAAGGAAGAAGAGTTTCGAGGTACGAAAAGTGGTTGAAAATGAAGATGGTTCTTGGGAAGTGATTTTCTTTGATCATAAAGCATCGAAATCGATTAACATTGAAGATGTTTTATCGTCTGTTAAAGAAGGAAAAGTGATTTCCAAAGGACGAAACTGGGTTTCGTACGAAGGGAAGTGTATATCCAATGATATGCAATTCATGGTGAAAGAAATAAGTGACACGAATTCTGTTTCGGTTAGTTTCTGGGACGAAACGGTAACGTTTGGGAAAAAGGTTAAGCATTCTAATATAGTTAAGCTTATTGGAATGTTTAGGTGTGGTAAAAAAGGGTATTTGGTTTATGAATTTGAAGATGGGAAGAGTTTAAGTGAAATTATGCATAGTTTGAGCTGGCAAAAGCGAATTAAAATCGCTTTGGATATTGCGAAAGCGATTAAATTCTTGCATTGTGAATGTTTATTGGTTGGGTTGGTTAGTGAAGTGTTGACGGAGATAGTTTTTATTAACGTAAAAGATGTTCCTCGCCTTAAACTCAACCCTCCTGGGATAGGAATGTCGTTTATCAGCATTAAAGGTTCTGTTGCTTCATCTTACGTCGCTTCAGAGGAAAAGATGGGAAAAGAAGTGTCCGAGAAGTGTGAGATATATGGTTTTGGAGTTATGTTGATTGAGTTATTAACGGGAAGAACTTCCGACGATATAGAAGCAGTTCAAAAAACGAACAATATTGTTGAGTGGGCCCGTTATTGTTACACTGACTGTCATCTTGACACGTGGATAGATCCTGTTCTGATGAAGGGTGGAGATGTATCGACATATCAAAACGATATTGTTGAGACTATGAATCTTGCCCTGCACTGTACCGCAGGTGATCCCACCACGAGGCCATGCGCAAGAGATGTAGTTGAAATCCTAGAAACAGTTCAATGTAACAGAATCACTTTTTGCTGA 2970 0.3949 MAKETPTMFSKLLVFICLFMFMLNFHLSHGEQQEFELLLSFKSSIHYDPHNFLSSWVNTSSNTICKWHGITCDNWSHVNTVSLSGKNISGEVSPSMFQLAHVTNLDLSNNQLVGEVVFNAPFLSSLLYLNLSNNNFTGPLPQSLFSSPFINLETLDLSNNMFSGRIPDQIGLLSSLTYLDLGGNVLVGKIPNSITNMTSLESLTLASNQLVGEIPTEISLMKRLKLIYLGYNNLSGEIPKNIGNLLSLNQLDLVYNNLSGPIPESLGNLTNLRYLFLYVNKLTGPIPKSIFKLKNLISLDLSDNYLSGEIPNLVVNLQKLEILQLFSNNFTGAIPNTITSLPHLQVLQLWSNKLSGEIPQTLGLHNNLAILDLSSNNLTGKIPNSLCASENFHKLILFSNSLNGEIPKGLTSCKTLQRVRLQNNNLSGKLPMEITQLPQIYLLDISGNKLSGRINDRKWKMPSLQMLNLANNNFTGELPNSFGSNKLEGLDFSQNQLSGNIQIHFRKLPELVQLKLNNNNLIGKIPEEIFQCKNLVSLDLSHNHLSGEIPAKLAEMPVLGLLDLSVNQFSGEIPKNLGSVESLVDVNISYNNFHGSLPSTEAFFAINASSVAGNKLCYRDGDVDGNGVVSNGLPLCKSDNPINSITLLVLVCFVLTGFVALSGAVIFVIFVRRRKKSFEVRKVVENEDGSWEVIFFDHKASKSINIEDVLSSVKEGKVISKGRNWVSYEGKCISNDMQFMVKEISDTNSVSVSFWDETVTFGKKVKHSNIVKLIGMFRCGKKGYLVYEFEDGKSLSEIMHSLSWQKRIKIALDIAKAIKFLHCECLLVGLVSEVLTEIVFINVKDVPRLKLNPPGIGMSFISIKGSVASSYVASEEKMGKEVSEKCEIYGFGVMLIELLTGRTSDDIEAVQKTNNIVEWARYCYTDCHLDTWIDPVLMKGGDVSTYQNDIVETMNLALHCTAGDPTTRPCARDVVEILETVQCNRITFC 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00232 989 Gene3D Ribonuclease Inhibitor 33 147 IPR032675 -
Vivi3g00232 989 Gene3D Transferase(Phosphotransferase) domain 1 698 828 - -
Vivi3g00232 989 SUPERFAMILY RNI-like 286 599 - -
Vivi3g00232 989 FunFam Leucine-rich repeat receptor protein kinase EMS1 148 239 - -
Vivi3g00232 989 Gene3D Ribonuclease Inhibitor 241 366 IPR032675 -
Vivi3g00232 989 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 677 789 - -
Vivi3g00232 989 SMART LRR_typ_2 341 365 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 99 120 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 197 221 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 461 484 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 508 532 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 149 173 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 123 147 IPR003591 -
Vivi3g00232 989 SMART LRR_typ_2 269 293 IPR003591 -
Vivi3g00232 989 FunFam Leucine-rich repeat receptor-like kinase 33 147 - -
Vivi3g00232 989 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 325 625 - -
Vivi3g00232 989 SUPERFAMILY Protein kinase-like (PK-like) 710 982 IPR011009 -
Vivi3g00232 989 Gene3D Ribonuclease Inhibitor 148 240 IPR032675 -
Vivi3g00232 989 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Vivi3g00232 989 FunFam Leucine-rich repeat receptor protein kinase EMS1 240 324 - -
Vivi3g00232 989 Pfam Protein tyrosine and serine/threonine kinase 717 978 IPR001245 GO:0004672|GO:0006468
Vivi3g00232 989 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Vivi3g00232 989 Pfam Leucine rich repeat 509 569 IPR001611 GO:0005515
Vivi3g00232 989 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Vivi3g00232 989 Gene3D Transferase(Phosphotransferase) domain 1 848 987 - -
Vivi3g00232 989 ProSiteProfiles Leucine-rich repeat profile. 295 317 IPR001611 GO:0005515
Vivi3g00232 989 PANTHER UNNAMED PRODUCT 123 904 - -
Vivi3g00232 989 ProSiteProfiles Protein kinase domain profile. 713 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00232 989 SUPERFAMILY L domain-like 49 385 - -
Vivi3g00232 989 Pfam Leucine Rich Repeat 367 387 IPR001611 GO:0005515
Vivi3g00232 989 Pfam Leucine Rich Repeat 463 483 IPR001611 GO:0005515
Vivi3g00232 989 Pfam Leucine Rich Repeat 295 316 IPR001611 GO:0005515
Vivi3g00232 989 Gene3D Ribonuclease Inhibitor 367 620 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00232 Vivi-Chr3 4305942 4309969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00232 18 979 Receptor kinase-like Gene Family AT2G25790 48.557 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vivi3g00232 PK_Tyr_Ser-Thr 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00232 - - gmx:100777118 1280.77