Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00227 ATGGATGAGTATGATAGTGGTGGCGGAAGTGGTGATAAAGCTCCGGAAGCGGAGGAAGAAGGGAGTACTCCACCACTTCCTGAGAAGGTTCAAGTTGGTGGTTCACCTTTATATAGACTTGATAGAAAGCTTGGGAAAGGAGGATTTGGACAAGTCTATGTTGGTAGACGACTAGGAGCTGGTTCCGGTGCCGTTGAGGTAGCATTAAAATTCGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCTCCCCATGAGTGGCAGGTTTACAATACGTTAGGTGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGGCAAGGGGACTACTATATTATGGTCATGGATATCCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACATGCGATGTCTACTGAAATGGTGGCATGCATTGCAATTGAGGCTATCTCCATATTAGAGAAAATGCATTGTAAAGGATACGTGCATGGTGATGTAAAACCTGAAAACTTTTTGCTTGGACCCCCGGGAACCCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGTTGGCGCGATAATTCAACTGGCCTTCATGTTGATTATGATCAACGCCCAGATGTTTTTAGGGGCACAGTTCGTTACGCTAGTGTGCATGCACATCTTGGTAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTTGCTTTCACGCTTGTCTTCCTTCTTCGTGGTCGGTTGCCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAAATGGCAACATCTCCCGAAGCTTTGTGTTGCTTTTGTCCTGCACCTTTCCGGCAGTTTGTTGAACATGTAGTTAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATCAGGCCAATAAATACCGAGGGTGCGCAAAAGCTTGTATGTCAAGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAGGAAGACAATGAACAGCCAAAGAAGAGGGTCCGAATGGGAACGCCAGCAACACAGTGGATTAGTGTTTACAATGCTCGGAGACCAATGAAACAAAGGTATCATTACAATGTGGCCGATGAGCGGCTATCCCAACATATTGAAAAAGGGAATGAAGATGGTTTATTTATCAGTAGCGTCGCTTCTTGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGTACTGGTTTCACAGCCCAAGTTTATGAGCTGTCTTCCAATTTTCTTCACAAGGAATGGATTATGGAGCAGTGGGATAAGAGTTACTACATCAGTGCCATAGCTGGAGCTTGTAATGGGTCTTCATTGGTTGTAATGTCAAAAGGGACACAATACATGCAACAATCCTATAAAGTCAGCGACTCATTTCCATTTAAGTGGATCAACAAAAAATGGAAAGAAGGATTCTTTGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCGATTGTTATGTCTCGTGGAGTTGGATTTACAGAGCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGAAAAGAATTACCGCATCACCGCAACTGCTGCGACGCCTGATCAAGCTGCATTTATTTTAAGTAACCCTAGAAGAAAACCACCTGATGAAACACAAGAAACGCTTCGCACGTCTGATTTTCCAAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTAGTTACGGGAGAACAGTTTCATAA 1797 0.4341 MDEYDSGGGSGDKAPEAEEEGSTPPLPEKVQVGGSPLYRLDRKLGKGGFGQVYVGRRLGAGSGAVEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHAMSTEMVACIAIEAISILEKMHCKGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAFTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLVCQVGQKRGRLTMEEEDNEQPKKRVRMGTPATQWISVYNARRPMKQRYHYNVADERLSQHIEKGNEDGLFISSVASCASLWALIMDAGTGFTAQVYELSSNFLHKEWIMEQWDKSYYISAIAGACNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWKEGFFVTAMATAGTRWAIVMSRGVGFTEQVVELDFLYPSEGIHRRWEKNYRITATAATPDQAAFILSNPRRKPPDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00227 598 ProSitePatterns Protein kinases ATP-binding region signature. 44 70 IPR017441 GO:0005524
Vivi3g00227 598 Pfam Protein kinase domain 38 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00227 598 SMART serkin_6 38 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00227 598 MobiDBLite consensus disorder prediction 1 34 - -
Vivi3g00227 598 FunFam casein kinase 1-like protein HD16 11 354 - -
Vivi3g00227 598 CDD STKc_CK1 38 307 - -
Vivi3g00227 598 SUPERFAMILY Protein kinase-like (PK-like) 38 311 IPR011009 -
Vivi3g00227 598 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00227 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Vivi3g00227 598 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g00227 598 Gene3D Transferase(Phosphotransferase) domain 1 11 361 - -
Vivi3g00227 598 PANTHER CASEIN KINASE-RELATED 38 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00227 Vivi-Chr3 4079168 4085373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00227 43 307 MAP Kinase Kinase Kinase AT5G50180 24.101 7.10e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vivi3g00227 Pkinase 5.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00227 - - gmx:100800125 1128.62