Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00206 ATGGAAGCTCAAGAGTTTTTCCAAACCACCTTTTTGTCCGACAATAATTTGGCCACAACCAATGTAAACAACGCTGCTGCTTCTGCTGCTTCTGAACACTTTGTTGTTGAAGATCTGTTTGATTTCTCTAATGATGATGATGATGCTGCCATTGGTGACCCTGCTTTTGATTCTCCTCCTACCATCTCTGATAATTCTCCACCGATTGAAACTAATGAAAATTCCAATTTTTTCATGGAGAATTCTGTTGATGAGCCTTTCTCCGGCGAACTCTCCGTCCCGTATGATGATCTTGCGGAGCTAGAATGGTTATCCAAATTTGATGAAGAATCATTCTCAAGTGAGGACCTACAGAAACTAGAATTGATATCTGGCTTGAAGGCATCAAACGATGCCGCATCAAAAGCAAACGAAGAATCCAACTCAAGCTTACACCCTCCTCAAGTGTCCGTGCCTGCTAAAGCTCGTAGTAAACGACCTCGTGGCCCTCCATGCAACTGGACTTCTCGTCTTCTAGTTCTCTCGCCGTCCACCGTCACCACGGCCACTGCATCCTCTCCCTCAGACGTCATAGCTCCACCAAAGAAACCCTCGCCGAGAAAAAGAGACAATGGCGATGGTGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAAACTCCTCAGTGGCGCACTGGACCACTAGGTCCAAAAACACTCTGCAACGCCTGCGGAGTCAGATATAAGTCAGGACGACTCGTACCTGAATACAGGCCTGCAGCAAGCCCAACGTTCGTGTTGACGAAACACTCCAACTCGCACCGGAAGGTGCAAGAACTCCGGCGCCAGAAGGAGATGATGAAGGTCCATCATCACCAAATGTTGCAACTACAAGTCCAACATCATCACAACATTATGTTTGATGGACCATCCAACGGTGATGAGTACTTGATCCATCAACACGTGGGACCTGACTTCACGCACCTCATGTAG 972 0.4743 MEAQEFFQTTFLSDNNLATTNVNNAAASAASEHFVVEDLFDFSNDDDDAAIGDPAFDSPPTISDNSPPIETNENSNFFMENSVDEPFSGELSVPYDDLAELEWLSKFDEESFSSEDLQKLELISGLKASNDAASKANEESNSSLHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSPSTVTTATASSPSDVIAPPKKPSPRKRDNGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMKVHHHQMLQLQVQHHHNIMFDGPSNGDEYLIHQHVGPDFTHLM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00206 323 MobiDBLite consensus disorder prediction 59 74 - -
Vivi3g00206 323 Gene3D - 205 256 IPR013088 GO:0006355|GO:0008270
Vivi3g00206 323 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Vivi3g00206 323 MobiDBLite consensus disorder prediction 47 74 - -
Vivi3g00206 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 269 - -
Vivi3g00206 323 FunFam GATA transcription factor 202 289 - -
Vivi3g00206 323 PANTHER GATA TRANSCRIPTION FACTOR 19 283 - -
Vivi3g00206 323 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Vivi3g00206 323 MobiDBLite consensus disorder prediction 133 209 - -
Vivi3g00206 323 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Vivi3g00206 323 MobiDBLite consensus disorder prediction 195 209 - -
Vivi3g00206 323 PIRSF Txn_fac_GATA_plant 8 301 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vivi3g00206 323 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
Vivi3g00206 323 MobiDBLite consensus disorder prediction 133 148 - -
Vivi3g00206 323 MobiDBLite consensus disorder prediction 170 188 - -
Vivi3g00206 323 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00206 Vivi-Chr3 3872952 3876657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00206 34 323 C2C2-Gata Transcription Factor Family AT5G25830 51.242 1.08e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi3g00206 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00206 - - mtr:11432019 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00206 3 3872952 3876657 Vivi3g00206 3 3872952 3876657 ECH