Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00183 ATGAGTACTACTATTCAACAACAACCTCATAACTCAGAAACCATAACCATCTCAAACAATTCACCACAACCATCATCCCCATCGCAATCACAATCTCAAAAAATCAAACGCATTAGAGACACAAACACAAACACAAACAAGCATCCACTCTACCGCGGTGTCCGTATGCGAAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGAAGAAGAAATCCCGAATATGGCTCGGCACATTTCCAAATCCAGAAATGGCAGCCCGGGCTCACGACGTGGCTGCTCTCAGCATCAAAGGAAATGCTGCCATTCTCAATTTCCCCGAGCTAGCAAACTCGCTCCCTCGACCGGCTTCTGTCTCTCCCCGCGATGTCCAGGCCGCTGCTACAAAAGCCGCTCACATGGAGTTTCCTTCTTCGGCTACCCCGTACGAATTGAGCGAGATTATCGAACTTCCTAGTCTCGGAAACAGCGGTGAGTTCGAGAAGGAGTTTGTGTTTATTGATTCTATTGACGCGTCGTGGATGTTTCAGCCTCCTTGCTTGCACACCATGGAAGATTTTCTTTGGAGTGAAGTTTATAGTAACTATGGCTAG 594 0.4798 MSTTIQQQPHNSETITISNNSPQPSSPSQSQSQKIKRIRDTNTNTNKHPLYRGVRMRNWGKWVSEIREPKKKSRIWLGTFPNPEMAARAHDVAALSIKGNAAILNFPELANSLPRPASVSPRDVQAAATKAAHMEFPSSATPYELSEIIELPSLGNSGEFEKEFVFIDSIDASWMFQPPCLHTMEDFLWSEVYSNYG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00183 197 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 154 - -
Vivi3g00183 197 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 MobiDBLite consensus disorder prediction 1 49 - -
Vivi3g00183 197 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Vivi3g00183 197 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Vivi3g00183 197 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vivi3g00183 197 FunFam Ethylene-responsive transcription factor 2 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00183 Vivi-Chr3 3341468 3342407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00183 11 197 AP2-EREBP Transcription Factor Family AT5G11590 51.364 5.72e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g00183 AP2 6.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00183 K09286 - cave:132189575 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00183 3 3341468 3342407 Vivi3g00183 3 3341468 3342407 ECH