Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00157 ATGGAGTGGGTTGTCGGCGGCAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCGTTTGGTGAAATTTTCATCGCTTCGGATATGGATAACTCTGAGATCGTTGCCGTCAAAATGGAAAAGAAGAATGCAAGGCATCCGCAACTATTGCAGGAGGCCAAATTATACAGTATTCTTCAAGGAGAAAGTGGTATTCCGAATATGAAATGGTGTGGTACTGATGGAGACCATAATGTTTTGGTAATGGATCTTCTGGGACGTAGTCTGGAAGACCTTTTTGTCTTCTGTGGGAGCAAGCTTTCTTTAAAAACAGTTTTGATGTTGGCCGACCAGATGCTTTCGAGAATAGAATATGTGCATTCCAGGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGCGAAAAGATATCGGGACCCCAAAACAAAACAGCATATTGCTTACAGAGAGAAGAAAAACTTAACAGGGACTGCACGATATGCAAGTTGCAATACTCACTTAGGAATTGAGCAAAGTCGTCGTGATGATTTGGAGTCTATTGGCTATGTTCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGATTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGGGAAAAGAAGTTATCAACTCCCATTGAGACGCTTTGCGAATCATATCCCGTGGAGTTCGCTTCTTACTTCCATTATTGTCGCTCTTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGATTTGTTCACTTGTGAAGGATATGAGTATGACAATTTATTCGACTGGACCATCCTAAGAAATCAGCAGGTGCAACAGACAAGGAGACCGAATCAATCATCTCCTTCAGATGCTGTGCCTAGTGCTGTTCCTAGCAGTCTAGAACCATTGGCTGTTGAAAAGCGTGTGGAAAAACAAACAGGAATCACTAACTCTCCTCAATTTACTGTAACAAAAATGCTACCTAATCTTGATCGCCCGAATGTGCGTGTGCATCCTAAGCCATCCAATGTTAAGAAACTGAATGCCAAGAATCACACTGAAAAACATAATGTGAACAATGGTCCATCCACTTCATCTCCCTTGCAAAAGTCAACTACACGAAATATATCCAAGCCTGAAAAGTCCACATTAACCTCAAACATAGGGCGTGTACTTGGTAGTAACCCCCATGTTTCAAGCAGCTGGATACCTTCATTACGACGGGTTTCTTCAACCAAATAA 1305 0.4107 MEWVVGGKFKIGRKIGSGSFGEIFIASDMDNSEIVAVKMEKKNARHPQLLQEAKLYSILQGESGIPNMKWCGTDGDHNVLVMDLLGRSLEDLFVFCGSKLSLKTVLMLADQMLSRIEYVHSRGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLAKRYRDPKTKQHIAYREKKNLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTPIETLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRDLFTCEGYEYDNLFDWTILRNQQVQQTRRPNQSSPSDAVPSAVPSSLEPLAVEKRVEKQTGITNSPQFTVTKMLPNLDRPNVRVHPKPSNVKKLNAKNHTEKHNVNNGPSTSSPLQKSTTRNISKPEKSTLTSNIGRVLGSNPHVSSSWIPSLRRVSSTK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00157 434 MobiDBLite consensus disorder prediction 348 434 - -
Vivi3g00157 434 FunFam CK1 family protein kinase 1 331 - -
Vivi3g00157 434 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vivi3g00157 434 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00157 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi3g00157 434 PANTHER CASEIN KINASE-RELATED 9 361 - -
Vivi3g00157 434 MobiDBLite consensus disorder prediction 299 324 - -
Vivi3g00157 434 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vivi3g00157 434 SMART serkin_6 9 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00157 434 MobiDBLite consensus disorder prediction 299 315 - -
Vivi3g00157 434 Gene3D Transferase(Phosphotransferase) domain 1 1 341 - -
Vivi3g00157 434 MobiDBLite consensus disorder prediction 375 434 - -
Vivi3g00157 434 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00157 Vivi-Chr3 3014058 3020496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00157 8 213 EF-hand Containing Proteins AT4G36070 27.700 7.97e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi3g00157 Pkinase 4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00157 K08960 K08959 gmx:100792736 662.914