LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g00144	ATGGAGAAGAGTGAAACGACGCTGGATTTAGCTTCTCGGAGATTTGCGAGGCACTTGGATTTCACTGCCGTATGTGGAGGTCCGGCGTACCTGACATTGTCGCCACCGACGCTACAGTCGCAAACTATTCTACAGTCGCCGACGCAGTCGCGTTCTCCGGCGCAATTGACATTGGATTTTCAGTCATTAAGTCAACGGCCGTGGTTACCTTTACAGCCACTGTGGAAACAGCAGAGAACGTCACAGTCTCCGCCGGTGATGTCACATTTACAATCTCCGCAGTCACAGTTAGTTTCTCCTGTCCGTCGTTTACAGCACTCCTCACAGAAACTTCCGGTGAAGAGAAAGCACGAGTCTCCTAGATCACAGCCTCAGAATAATGCAGGATTAAAGGACAATACTCCAAAGAAACAAAAACAGTGTAACTGCAAAAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTACTGTGATGGTTGCAACTGTCTGAATTGTCATAATAATGTGGACAATGAGGCTGCCCGACAGGAGGCAGTTGGAATAACTCTGGAAAGAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCACTAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAACTCAAGTTACAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTACTGTGAGTGTTTCCAAGCCAATATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAAAGAAGAGCAGTTTTCCAAGAAGACTGTAGACTAATACAAATCAGACAGGCAACAAATGCGGCCATTAGTGGAGCAGTTGGACCCTCCAGCTATATAACCCATATAACACCCAAAAAGAGAAAAATCCCAGAAATATTTTCTGGCAAATCGTTCATAGATCAAACTGTTGACATGACTGGTCAATACCAACAGGGTCACCATTCAAATTCAGCGTGTTTGGATTTGAAAACATGTGAAACTAATAAGGAATTTGATCCCACAACTTCATCTCCTTTATCTCCGCCAGCTTCCTTTGTTTCTGACACTGCCAATACAATAATTCCCGGATCTTCAAGATCTACATACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAATGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCCGGAGAAGCTACAAAGAAAAATGCAGATCGATTGCATTTTCCAGAAATGAGAGGGAAAGAAGTTAGAAAAATAGAGACCAGGAAATCTGAAGCTTCTACTTCATCAGTTCAATCGTTGCAAGACAGTCGAAAAGTTGTCAAGCCTGATTGTGAGAATCATGCCAATAAAGATGTAACAGCTGCAGTTGATATTGACTTTCGTAATATGCAATTGTCACCGGAAACACTTGAATTGATGTGTGATGAACAGGATGTGATATTTTTCGATAATGTTTCTGCAAATGGAGTTGCAATTGACAACACTGAACATAACATGATTCAGAAGTCTTCCAATTCTGATGGATGCTCAGATACTTATGCAGAGCAGGAAAGGCTTGTCCTGACCAAGTTCAGGGATGTTCTTGGTGGACTCATTACTCTTGGTAGCATAAAAGGTCAGATTCCAGAAGCAGAAAGTGGGATCAGAAATAAATGA	1683	0.4219	MEKSETTLDLASRRFARHLDFTAVCGGPAYLTLSPPTLQSQTILQSPTQSRSPAQLTLDFQSLSQRPWLPLQPLWKQQRTSQSPPVMSHLQSPQSQLVSPVRRLQHSSQKLPVKRKHESPRSQPQNNAGLKDNTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPLKPEVSMEEVSETQVTGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAVFQEDCRLIQIRQATNAAISGAVGPSSYITHITPKKRKIPEIFSGKSFIDQTVDMTGQYQQGHHSNSACLDLKTCETNKEFDPTTSSPLSPPASFVSDTANTIIPGSSRSTYRSVLADVLQTQNVKNLCSLLVVLSGEATKKNADRLHFPEMRGKEVRKIETRKSEASTSSVQSLQDSRKVVKPDCENHANKDVTAAVDIDFRNMQLSPETLELMCDEQDVIFFDNVSANGVAIDNTEHNMIQKSSNSDGCSDTYAEQERLVLTKFRDVLGGLITLGSIKGQIPEAESGIRNK	560

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi3g00144	560	ProSiteProfiles	CRC domain profile.	137	261	IPR005172	-
Vivi3g00144	560	SMART	CXC_2	221	262	IPR033467	-
Vivi3g00144	560	SMART	CXC_2	136	176	IPR033467	-
Vivi3g00144	560	MobiDBLite	consensus disorder prediction	76	140	-	-
Vivi3g00144	560	PANTHER	TESMIN/TSO1-RELATED	45	544	IPR028307	-
Vivi3g00144	560	MobiDBLite	consensus disorder prediction	122	140	-	-
Vivi3g00144	560	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	138	173	IPR005172	-
Vivi3g00144	560	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	224	258	IPR005172	-
Vivi3g00144	560	MobiDBLite	consensus disorder prediction	76	106	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g00144	Vivi-Chr3	2670952	2676230	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g00144	10	547	CPP Transcription Factor Family	AT4G29000	42.342	3.49e-120	365

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CPP	Vivi3g00144		TCR	2.9e-12	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g00144	-		K21776	gmx:100811459	631.713

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