Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00143 ATGGAGAAGAGTGAAACGACGCTGGATTTAGCTTCTCGGAGATTTGCGAGGCACTTGGATTTCACTGCCGTATGTGGAGGTCCGGCGTACCTGACATTGTCGCCACCGACGCTACAGTCGCAAACTATTCTACAGTCGCCGACGCAGTCGCGTTCTCCGGCGCAATTGACATTGGATTTTCAGTCATTAAGTCAACGGCCGTGGTTACCTTTACAGCCACTGTGGAAACAGCAGAGAACGTCACAGTCTCCGCCGGTGATGTCACATTTACAATCTCCGCAGTCACAGTTAGTTTCTCCTGTCCGTCGTTTACAGCACTCCTCACAGAAACTTCCGGTGAAGAGAAAGCACGAGTCTCCTAGATCACAGCCTCAGAATAATGCAGGATTAAAGGACAATACTCCAAAGAAACAAAAACAGTGTAACTGCAAAAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTACTGTGATGGTTGCAACTGTCTGAATTGTCATAATAATGTGGACAATGAGGCTGCCCGACAGGAGGCAGTTGGAATAACTCTGGAAAGAAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCACTAAAACCAGAAGTTTCTATGGAGGAAGTGTCTGAAACTCAAGTTACAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTACTGTGAGTGTTTCCAAGCCAATATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAAAGAAGAGCAGTTTTCCAAGAAGACTGTAGACTAATACAAATCAGACAGGCAACAAATGCGGCCATTAGTGGAGCAGTTGGACCCTCCAGCTATATAACCCATATAACACCCAAAAAGAGAAAAATCCCAGAAATATTTTCTGGCAAATCGTTCATAGATCAAACTGTTGACATGACTGGTCAATACCAACAGGGTCACCATTCAAATTCAGCGTGTTTGGATTTGAAAACATGTGAAACTAATAAGGAATTTGATCCCACAACTTCATCTCCTTTATCTCCGCCAGCTTCCTTTGTTTCTGACACTGCCAATACAATAATTCCCGGATCTTCAAGATCTACATACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAATGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCCGGAGAAGCTACAAAGAAAAATGCAGATCGATTGCATTTTCCAGAAATGAGAGGGAAAGAAGTTAGAAAAATAGAGACCAGGAAATCTGAAGCTTCTACTTCATCAGTTCAATCGTTGCAAGACAGTCGAAAAGTTGTCAAGCCTGATTGTGAGAATCATGCCAATAAAGATGTAACAGCTGCAGTTGATATTGACTTTCGTAATATGCAATTGTCACCGGAAACACTTGAATTGATGTGTGATGAACAGGATGTGATATTTTTCGATAATGTTTCTGCAAATGGAGTTGCAATTGACAACACTGAACATAACATGATTCAGAAGTCTTCCAATTCTGATGGATGCTCAGATACTTATGCAGAGCAGGAAAGGCTTGTCCTGACCAAGTTCAGGGATGTTCTTGGTGGACTCATTACTCTTGGTAGCATAAAAGATTCCAGAAGCAGAAAGTGGGATCAGAAATAA 1674 0.4217 MEKSETTLDLASRRFARHLDFTAVCGGPAYLTLSPPTLQSQTILQSPTQSRSPAQLTLDFQSLSQRPWLPLQPLWKQQRTSQSPPVMSHLQSPQSQLVSPVRRLQHSSQKLPVKRKHESPRSQPQNNAGLKDNTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPLKPEVSMEEVSETQVTGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAVFQEDCRLIQIRQATNAAISGAVGPSSYITHITPKKRKIPEIFSGKSFIDQTVDMTGQYQQGHHSNSACLDLKTCETNKEFDPTTSSPLSPPASFVSDTANTIIPGSSRSTYRSVLADVLQTQNVKNLCSLLVVLSGEATKKNADRLHFPEMRGKEVRKIETRKSEASTSSVQSLQDSRKVVKPDCENHANKDVTAAVDIDFRNMQLSPETLELMCDEQDVIFFDNVSANGVAIDNTEHNMIQKSSNSDGCSDTYAEQERLVLTKFRDVLGGLITLGSIKDSRSRKWDQK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00143 557 ProSiteProfiles CRC domain profile. 137 261 IPR005172 -
Vivi3g00143 557 SMART CXC_2 221 262 IPR033467 -
Vivi3g00143 557 SMART CXC_2 136 176 IPR033467 -
Vivi3g00143 557 MobiDBLite consensus disorder prediction 76 140 - -
Vivi3g00143 557 PANTHER TESMIN/TSO1-RELATED 45 544 IPR028307 -
Vivi3g00143 557 MobiDBLite consensus disorder prediction 122 140 - -
Vivi3g00143 557 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 138 173 IPR005172 -
Vivi3g00143 557 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 224 258 IPR005172 -
Vivi3g00143 557 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00143 Vivi-Chr3 2670952 2676230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00143 10 550 CPP Transcription Factor Family AT4G29000 42.294 2.05e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi3g00143 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00143 - K21776 gmx:100811459 632.869