Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00114 ATGGGAAGTGAGAGGTCGATTTCTGGTCCATCTGATACTGTACAGAAAATTAGACCATTGCATGGGAGGACTACTGGCCCTACAAGGCGATCCACTAAAGGAAATTGGACAGCTGAGGAGGACGAAATTTTGCGGAAGGCTGTTGAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGGACTGATGTACAATGCTTGCATAGGTGGCAAAAAGTCTTAAATCCAGAACTTATCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAACTATCGTGGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGCATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAATAAGGAAGCATGGACGCAGGAAGAAGAATTGGCTCTAATACATGCTCATCAGATTTATGGGAATAGATGGGCAGAATTATCTAAGTTTTTGCCTGGAAGGACAGACAATGCGATAAAGAACCATTGGAATAGTTCTGTCAAAAAGAAATTGGATTCTTACTTAGCGTCGGGCTTGCTTGCTCAGTTTCAAAATGTACAACTTGTTGGAAATCCAAATCAACCTATTGATTCATCCTGTGCAAGGTTGCAGTTTAGTGTAGATGATATCGGTCCTAGGGGGACTGACGGTGAGGAAGTTTCACTGTGTAGCCAGGAGTCGGCTAATGCTGACAACTTTCCGTCTGGCAGAGAGTTGAGAATTGTTATGCAAAATGGAGAAGAGTACAGGGCCAATGAAGAATCTAATCAAGCATCTTGTTCAGAGCCATATTACTTGTCTCTGGATGATGTTACTTGCCAAGAACCATTTGAGCAGAAATATTCAAACCAACCCGGAAGTTCTTCTGCTAACGTGGATTACCAATTTAATTTACATGCTTTGCCCAACATTTCCTCGCTTGACTTTGGGCAGGAATCATCACAGTTGCAAAATGATTCTTTAGCTCCCAGTGAAAGTCATAACATGATGATTGTTCCATATGAATATCAGCCTTCATCTATGGACAATGCCGAAGGAGAACAAAACATGTTGGTAACTGATGATGAATGTAGGTTCCTATTTTCAGAGGCAATGAGTGAAGAATGCTTTTCCTCAGGAGTAAATAATATTGACTTGTCTAGACGCACTTCATCTCTTTGTCAGTCACCTTTACCATCTTGTGGTAGAATGGTGATGTATGCAGCCGAAGCCAATCCATTGGTAAGCTCTGATGATCTACATTGTGTCTCGAGAGAACAAGATGGCTTGATTTATGCCAATGATAACAATAGGTATGAAGATGTTGGAGAAGATGAAAACTTAAAATTGGTCCCTGTAAATAGTTCTGGATGTGGATCAGATACTATGCAAAATTGCTATCCAATTGATGAAAAACCGAAGGGACATATAAAACAGGAGGAAGCAGGAGGAACACTATGTTATGAACCACCTCGTTTTCCAAGTTTGGATATACCTTTCATGAGCTGTGATCTTATACAGTCTGGCGACATGCAGCAAGAATTCAGTCCCTTAGGTATCCGACAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTCAGATTGTGGGACTCACCTTCTCGAATTGATAGTCCAAAGGCTTTATTAAAAAGTGCTGCTAAAACTTTTACAAGTACGCCATCCATAATGAAGAAGAAGAAACGAAATCGAGACCTTTTATCTCCACTATCAGATAGAAGAATGGAGAAGAAACATGAGATTGACTTGACATCAACTTTGATTACAAACTTCTCTCGTTTAGATGTCATGTTTGATGATAATGAGGCTCAAGGTATTGAAGACGATAAAGAAAATTGTAGACCAGCTTTTAAGGTAGAGGAGAAAAGTAACTCTCAGAACAAGATTGAGCAGTCTCCTCTCGATGCCGATGCTAAGATGAAGAATGATATTGATCCTGCTGCCGAAATTGTGCAACAGCCTTCTGGAGTTTTGGTTGAACATGATATGAATGATCCGTCGTTGTATTCTCCTAGTCAAATTGGTTTGAAATCAGATATAGTTCTTAGTTTAAGTGCTAGAAGTCATAAAAAGCCAGCTTCAAGACTTAATTCTCCTTGTGTTCGATTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTACAATCCGTCTGTTCATCACCAGGACCAGGAGAGAATATGGGCGATCAAACCGGAAACAATGGTGGTTTTGAAAGAAATAACATTTTTGGCGGAACACCTTATAGGAAAAGCTTTGAATCACCTTCGGCATGGAAATCTCCCCTGTTCTTCAGCACTTTTTTGACTAGCCCCAGGCTTGATACTGAAATTACAATTGAGGACTATGGATGTTTCTTTAGCCCGGGCGATAAAAGCTATGATGCAATGGGATGGATGAAACAGATTGGTGAACACACTGCTGCTCAATATGCCGATGCTCTAGAGATTTTGGAAAATGAAACTCCTAAGGCACTACCAAAAGATGCATTTGAAGACAACCAAGAAAACAAGGATCCTCATAATCAACCTGGGAACCAGTCTAACTCGGCTTCAAATGCTTTGGTGGAACGACGCATACTTGACTTCAGTGAATGTGGATCTCCAGAGAGGGGTGATAAGGGCAAGTCCTCAGTTATGAGCATTTCAAGTCCTTCGTATTTGTTGAAGGGCTGTAGATAA 2730 0.4037 MGSERSISGPSDTVQKIRPLHGRTTGPTRRSTKGNWTAEEDEILRKAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDETIVDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIHAHQIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVQLVGNPNQPIDSSCARLQFSVDDIGPRGTDGEEVSLCSQESANADNFPSGRELRIVMQNGEEYRANEESNQASCSEPYYLSLDDVTCQEPFEQKYSNQPGSSSANVDYQFNLHALPNISSLDFGQESSQLQNDSLAPSESHNMMIVPYEYQPSSMDNAEGEQNMLVTDDECRFLFSEAMSEECFSSGVNNIDLSRRTSSLCQSPLPSCGRMVMYAAEANPLVSSDDLHCVSREQDGLIYANDNNRYEDVGEDENLKLVPVNSSGCGSDTMQNCYPIDEKPKGHIKQEEAGGTLCYEPPRFPSLDIPFMSCDLIQSGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRIDSPKALLKSAAKTFTSTPSIMKKKKRNRDLLSPLSDRRMEKKHEIDLTSTLITNFSRLDVMFDDNEAQGIEDDKENCRPAFKVEEKSNSQNKIEQSPLDADAKMKNDIDPAAEIVQQPSGVLVEHDMNDPSLYSPSQIGLKSDIVLSLSARSHKKPASRLNSPCVRLKEHERLSVSVTCVQSVCSSPGPGENMGDQTGNNGGFERNNIFGGTPYRKSFESPSAWKSPLFFSTFLTSPRLDTEITIEDYGCFFSPGDKSYDAMGWMKQIGEHTAAQYADALEILENETPKALPKDAFEDNQENKDPHNQPGNQSNSASNALVERRILDFSECGSPERGDKGKSSVMSISSPSYLLKGCR 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00114 909 CDD SANT 87 131 IPR001005 -
Vivi3g00114 909 Gene3D - 85 136 - -
Vivi3g00114 909 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Vivi3g00114 909 MobiDBLite consensus disorder prediction 856 871 - -
Vivi3g00114 909 Gene3D - 32 84 - -
Vivi3g00114 909 MobiDBLite consensus disorder prediction 846 909 - -
Vivi3g00114 909 FunFam Transcriptional activator Myb isoform A 32 84 - -
Vivi3g00114 909 PANTHER MYB PROTEIN-RELATED 33 106 - -
Vivi3g00114 909 Gene3D - 138 199 - -
Vivi3g00114 909 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Vivi3g00114 909 MobiDBLite consensus disorder prediction 1 36 - -
Vivi3g00114 909 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Vivi3g00114 909 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Vivi3g00114 909 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
Vivi3g00114 909 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Vivi3g00114 909 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Vivi3g00114 909 CDD SANT 139 179 IPR001005 -
Vivi3g00114 909 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Vivi3g00114 909 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Vivi3g00114 909 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Vivi3g00114 909 FunFam Transcription factor MYB3R-2 138 200 - -
Vivi3g00114 909 SMART sant 84 133 IPR001005 -
Vivi3g00114 909 SMART sant 32 81 IPR001005 -
Vivi3g00114 909 SMART sant 136 184 IPR001005 -
Vivi3g00114 909 CDD SANT 35 79 IPR001005 -
Vivi3g00114 909 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Vivi3g00114 909 FunFam Transcriptional activator Myb isoform A 85 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00114 Vivi-Chr3 1983798 1990487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00114 21 909 MYB Transcription Factor Family AT4G32730 43.350 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g00114 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00114 - K09420 psat:127084879 1696.02