Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00096 ATGTCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGTCTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTATTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTCTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA 1152 0.4323 MSMGSIMERERTRKRPRLEWDVAPQPSFPQRICTVVGDEGIEKKHASPPRRNEDKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLISSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00096 383 CDD PKc_CLK 55 379 - -
Vivi3g00096 383 Pfam Protein kinase domain 57 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00096 383 Gene3D Phosphorylase Kinase; domain 1 55 134 - -
Vivi3g00096 383 SUPERFAMILY Protein kinase-like (PK-like) 55 380 IPR011009 -
Vivi3g00096 383 Gene3D Transferase(Phosphotransferase) domain 1 108 379 - -
Vivi3g00096 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vivi3g00096 383 ProSiteProfiles Protein kinase domain profile. 54 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00096 383 FunFam Serine/threonine-protein kinase AFC2 130 379 - -
Vivi3g00096 383 SMART serkin_6 54 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00096 383 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 55 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00096 Vivi-Chr3 1670755 1677438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00096 59 380 Core Cell Cycle Gene Families AT3G48750 27.964 5.11e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g00096 Pkinase 4.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00096 K08287 - gmx:100782453 640.958