LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g00095	ATGTCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGTCACAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGTCTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTATTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTCTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA	1158	0.4326	MSMGSIMERERTRKRPRLEWDVAPQPSFPQSQRICTVVGDEGIEKKHASPPRRNEDKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLISSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g00095	385	SUPERFAMILY	Protein kinase-like (PK-like)	57	382	IPR011009	-
	Vivi3g00095	385	Gene3D	Transferase(Phosphotransferase) domain 1	110	381	-	-
	Vivi3g00095	385	PANTHER	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	57	382	-	-
	Vivi3g00095	385	ProSiteProfiles	Protein kinase domain profile.	56	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g00095	385	Coils	Coil	382	385	-	-
	Vivi3g00095	385	CDD	PKc_CLK	57	381	-	-
	Vivi3g00095	385	Pfam	Protein kinase domain	59	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g00095	385	SMART	serkin_6	56	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g00095	385	FunFam	Serine/threonine-protein kinase AFC2	132	381	-	-
	Vivi3g00095	385	Gene3D	Phosphorylase Kinase; domain 1	57	136	-	-
	Vivi3g00095	385	MobiDBLite	consensus disorder prediction	1	27	-	-
	Vivi3g00095	385	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	177	189	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g00095	Vivi-Chr3	1670753	1677438	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g00095	61	382	Core Cell Cycle Gene Families	AT3G48750	27.964	4.62e-28	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CLK	Vivi3g00095		Pkinase	4.5e-51	CL0016