Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00085 ATGGCGGCAACAGAATCCGATCTCGACGAGTTTCTCAATCTCGATTACGAACCTCGGTGTCCGAGTCTTGCCGATACGGAGGCGTTGATGACCGCCGCTTTCCAAACTCTTTTACCGGATGTGGTAACTTCATTTTCAACTTGTGGTGGAGTTACAGATTCTCAAAACCCCACTCCCAAACATTCCACCATCACTGCAACTATTGATTCTCAATCATCCCTTTATGGCACTGTTGGAAGCCCAGTTTCAGCCAATAAACCAACCAGCAGAGAGACTCATACCAAAGGAACAACAAGTGGTTCCTCTGATCCTTCTGATGAAGATGATGAACTAGGCCCTTGTGAACAAAGCACTAATCCACTCGATATCAAACGCCTTCGAAGAAAGGTCTCCAATCGCGAGTCGGCCAGACGATCGAGGCGCAGAAAACAAGCTCATTTGTCTGAACTCGAGTCTCAGGTTGAAAAACTGAAACTGGAAAATGCAACCCTATACAAACAGTTTACAAATACTAGCCAACAATTTCATGAGGCTGATACAAATAACAGAGTGCTAAAATCAGATGTAGAAGCTTTAAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGCTCTTTCACCACATCATTAAACAATCAGTTTTTTCAGAATCAATGTCAAATAAGCACACTGCCGCAACTCAATGTGACATCTTTGCGCCGTGCGCCACATGTTTCACCAACCATAAATGTCCAGCAGGGAAATGGTGCCTCCTACGGTGGTGTCACAGTTGGTGAACATAATACAAATCTTCTGGGAAACTTGGACATGAGTAACTACAACGACTACATTGACAATGGAGTCTTGAGCAATTCTATGAGTTGCGTAACTACTACCTGGCCCTAA 891 0.4411 MAATESDLDEFLNLDYEPRCPSLADTEALMTAAFQTLLPDVVTSFSTCGGVTDSQNPTPKHSTITATIDSQSSLYGTVGSPVSANKPTSRETHTKGTTSGSSDPSDEDDELGPCEQSTNPLDIKRLRRKVSNRESARRSRRRKQAHLSELESQVEKLKLENATLYKQFTNTSQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFFQNQCQISTLPQLNVTSLRRAPHVSPTINVQQGNGASYGGVTVGEHNTNLLGNLDMSNYNDYIDNGVLSNSMSCVTTTWP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00085 296 MobiDBLite consensus disorder prediction 72 149 - -
Vivi3g00085 296 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 122 185 IPR004827 GO:0003700|GO:0006355
Vivi3g00085 296 Gene3D - 123 179 - -
Vivi3g00085 296 Coils Coil 182 202 - -
Vivi3g00085 296 PANTHER BASIC LEUCINE ZIPPER 63 52 263 - -
Vivi3g00085 296 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 127 142 IPR004827 GO:0003700|GO:0006355
Vivi3g00085 296 MobiDBLite consensus disorder prediction 72 101 - -
Vivi3g00085 296 SUPERFAMILY Leucine zipper domain 124 175 IPR046347 GO:0003700|GO:0006355
Vivi3g00085 296 CDD bZIP_plant_GBF1 125 176 IPR045314 GO:0003700|GO:0006355
Vivi3g00085 296 Coils Coil 133 167 - -
Vivi3g00085 296 FunFam BZIP transcription factor 122 173 - -
Vivi3g00085 296 SMART brlzneu 120 184 IPR004827 GO:0003700|GO:0006355
Vivi3g00085 296 Pfam bZIP transcription factor 123 174 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00085 Vivi-Chr3 1610795 1614989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00085 69 296 bZIP Transcription Factor Family AT5G24800 46.154 1.54e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00085 bZIP_1 9.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00085 K25784 - gmx:780555 342.813