Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00084 ATGGCAGCAACGGAATTGGATCTCGACGAGTTTCTCAATCTCGATTACGAACTTCGGTATCCGAGTCTTGCCGATACGGAGGCGTTCATGAACGCCGCTTTCCAAACTCTTTTACCGGATGTGGTAGCTTCATTTTCAACTTGTGGTGGAGTTGGAGACTCTCAAAACCTTACTCCCAAACATTCCACCATCAGTGCTACTATTGATTCTCAATCATCCCTTTATGGCACTGTTGGAAGCCCAGTTTCAGCCAATAAACCAACCAGCAGAGAGAACCATACCAAAGGGACAACAAGTGGCTCATCTGATCCTTCTGATGAAGATGATGAACAAAGCACTAATCCACGTGATATCAAACGCATTCGGAGAATGGATTCTAATCGCGAATCAGCCAAAAGATCAAGGCAAAGAAAACAAGCTCATTTGTCTGAACTTGAGTCTCAGGTTGAAAAACTGAAACTGGAAAAGGTAACCCTATACAAACAGTTTACAAATGCTAGCCAACATTTTCATGAGGCTGATATAAATAACAGAGTGCTAAAATCAGATGTTGAAGCTTTAAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGTTCTTTCACCCCATCATTAAACAATCAGTTTTTTCCGAATCAATGTCAAATAAGCACACCGCCGCAACTCAATGTGCCATCTTTGCGCCGCGTGCCACATGTTTCACCAACCATCAATGTCCAACAGGGAAATGGTGCTTCGTATGGTGGCGTCGCGGCCGATGAACACTATTCAAATCTTCTTGGGTTTGGAAACTTGGACATGAGTAATTACAATGACATCATTGACAATGGAGTCTTAAGCAATGCTATGAGTTGTGTAACTACTACCTGGCCCTAA 882 0.4286 MAATELDLDEFLNLDYELRYPSLADTEAFMNAAFQTLLPDVVASFSTCGGVGDSQNLTPKHSTISATIDSQSSLYGTVGSPVSANKPTSRENHTKGTTSGSSDPSDEDDEQSTNPRDIKRIRRMDSNRESAKRSRQRKQAHLSELESQVEKLKLEKVTLYKQFTNASQHFHEADINNRVLKSDVEALRAKVKLAEDMVTRSSFTPSLNNQFFPNQCQISTPPQLNVPSLRRVPHVSPTINVQQGNGASYGGVAADEHYSNLLGFGNLDMSNYNDIIDNGVLSNAMSCVTTTWP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00084 293 Coils Coil 128 162 - -
Vivi3g00084 293 PANTHER BASIC LEUCINE ZIPPER 63 53 245 - -
Vivi3g00084 293 MobiDBLite consensus disorder prediction 109 145 - -
Vivi3g00084 293 Gene3D - 118 174 - -
Vivi3g00084 293 FunFam BZIP transcription factor 117 168 - -
Vivi3g00084 293 SMART brlzneu 115 179 IPR004827 GO:0003700|GO:0006355
Vivi3g00084 293 MobiDBLite consensus disorder prediction 75 101 - -
Vivi3g00084 293 Pfam bZIP transcription factor 116 166 IPR004827 GO:0003700|GO:0006355
Vivi3g00084 293 Coils Coil 177 197 - -
Vivi3g00084 293 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 117 162 IPR004827 GO:0003700|GO:0006355
Vivi3g00084 293 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 122 137 IPR004827 GO:0003700|GO:0006355
Vivi3g00084 293 SUPERFAMILY Leucine zipper domain 118 169 IPR046347 GO:0003700|GO:0006355
Vivi3g00084 293 CDD bZIP_plant_GBF1 120 171 IPR045314 GO:0003700|GO:0006355
Vivi3g00084 293 MobiDBLite consensus disorder prediction 75 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00084 Vivi-Chr3 1595370 1599136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00084 69 293 bZIP Transcription Factor Family AT5G24800 45.339 8.41e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00084 bZIP_1 2.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00084 K25784 - gmx:780555 326.25