LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g00078	ATGGTTTTCGTCAAGTCTCAGAAATCAAAGGCGTACTTTAAGCGCTACCAGGTTAAGTTCAAGAGAAGAAGAGAGGGTAAGACTGATTACAGAGCCAGAATTCGCCTGATTAATCAGGACAAGAATAAATACAACACTCCCAAATATCGTTTCGTTGTTCGATTTACGAACAAAGACATTGTTGCTCAAATTGTCTCGGCTAGCATTGCCGGTGATATTGTTCTTGCTGCAGCTTATTCGCATGAGCTACCTCACTATGGTCTCACAGTAGGACTTACAAACTATGCTGCAGCCTATTGCACTGGTCTCCTTTTGGCCCGCCGAGTTCTTAAGACTCTTGAAATGGATGAGGAATATGAAGGCAATGTAGAGGCTACTGGTGAAGATTATTCAGTCGAACCCGCTGATTCCAGGAGGCCTTTCCGTGCTCTCCTTGATGTTGGTTTGGTCAAGACCACAACTGGTAACCGGGTGTTTGGGGCACTCAAGGGAGCTTTGGATGGAGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGACAAGGAGAAAAAGGAGCTTGATGCTGAGGTTCACAGGAAGTATATCTTTGGTGGACATGTTACTGCCTATATGAAGACATTGATTGAAGACGAGCCGGAGAAGTACCAAACTCACTTCAGCCAATATATCAAGAAAGGGATAGAAGCTGATGGGATTGAGGAACTTTACAAGAAGGTTCATGCTGCTATTCGTGCAGATCCCTCGATCAAAAAGTCTGGGAAGCAGCCACCAAAGGAACACAAGAGGTACAACTTGAAGAAGCTCACTTATGATGAGAGAAGGGCAAAGTTGGTTGCTCGCTTGGAGGCGCTAAATTCTGCAGTGGATGAAGACGAGGATGACGAGTGA	897	0.4493	MVFVKSQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVLAAAYSHELPHYGLTVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVTAYMKTLIEDEPEKYQTHFSQYIKKGIEADGIEELYKKVHAAIRADPSIKKSGKQPPKEHKRYNLKKLTYDERRAKLVARLEALNSAVDEDEDDE	298

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g00078	298	CDD	Ribosomal_L18_L5e	41	170	-	-
	Vivi3g00078	298	SUPERFAMILY	Translational machinery components	11	252	-	-
	Vivi3g00078	298	Gene3D	-	1	291	-	-
	Vivi3g00078	298	Pfam	Ribosomal L18 C-terminal region	235	288	IPR025607	-
	Vivi3g00078	298	PANTHER	RIBOSOMAL PROTEIN L5-RELATED	1	290	IPR005485	GO:0003735\|GO:0005840\|GO:0006412\|GO:0008097
	Vivi3g00078	298	MobiDBLite	consensus disorder prediction	250	269	-	-
	Vivi3g00078	298	Hamap	50S ribosomal protein L18 [rplR].	14	246	IPR005485	GO:0003735\|GO:0005840\|GO:0006412\|GO:0008097
	Vivi3g00078	298	Coils	Coil	277	297	-	-
	Vivi3g00078	298	FunFam	60S ribosomal protein L5	1	291	-	-
	Vivi3g00078	298	Pfam	Ribosomal large subunit proteins 60S L5, and 50S L18	14	175	IPR005485	GO:0003735\|GO:0005840\|GO:0006412\|GO:0008097

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g00078	Vivi-Chr3	1446109	1448468	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g00078	1	290	Cytoplasmic Ribosomal Protein Gene Family	AT5G39740	84.483	0.0	511

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g00078	K02932		-	gmx:100805868	548.51

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