Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00048 ATGCCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGGTCGGGATGGACATTATGTTTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTCTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGACTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCGTCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTTTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA 1203 0.4347 MPMGSIMERERTRKRPRLEWDVAPQPSFPQRICTVVGDEGIEKKHASPPRRNEGRDGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00048 400 FunFam Serine/threonine-protein kinase AFC2 58 151 - -
Vivi3g00048 400 ProSiteProfiles Protein kinase domain profile. 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00048 400 Gene3D Phosphorylase Kinase; domain 1 58 151 - -
Vivi3g00048 400 FunFam Serine/threonine-protein kinase AFC2 147 396 - -
Vivi3g00048 400 Gene3D Transferase(Phosphotransferase) domain 1 125 396 - -
Vivi3g00048 400 CDD PKc_CLK 58 396 - -
Vivi3g00048 400 Pfam Protein kinase domain 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00048 400 SUPERFAMILY Protein kinase-like (PK-like) 58 397 IPR011009 -
Vivi3g00048 400 SMART serkin_6 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00048 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vivi3g00048 400 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 34 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00048 Vivi-Chr3 587127 590814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00048 70 397 Core Cell Cycle Gene Families AT3G48750 26.506 1.66e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g00048 Pkinase 9.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00048 K08287 - gmx:100782453 685.256