Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00047 ATGCCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGTCACAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGGTCGGGATGGACATTATGTTTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTCTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGACTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCGTCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTTTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA 1209 0.4351 MPMGSIMERERTRKRPRLEWDVAPQPSFPQSQRICTVVGDEGIEKKHASPPRRNEGRDGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00047 402 ProSiteProfiles Protein kinase domain profile. 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00047 402 CDD PKc_CLK 60 398 - -
Vivi3g00047 402 Gene3D Phosphorylase Kinase; domain 1 60 153 - -
Vivi3g00047 402 Gene3D Transferase(Phosphotransferase) domain 1 127 398 - -
Vivi3g00047 402 SMART serkin_6 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00047 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 34 399 - -
Vivi3g00047 402 FunFam Serine/threonine-protein kinase AFC2 149 398 - -
Vivi3g00047 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vivi3g00047 402 Pfam Protein kinase domain 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00047 402 SUPERFAMILY Protein kinase-like (PK-like) 60 399 IPR011009 -
Vivi3g00047 402 FunFam Serine/threonine-protein kinase AFC2 60 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00047 Vivi-Chr3 587127 590815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00047 72 399 Core Cell Cycle Gene Families AT3G48750 27.761 1.56e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g00047 Pkinase 9.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00047 K08287 - gmx:100782453 689.878