Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00046 ATGCCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGTCACAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTCTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGACTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCGTCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTTTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA 1158 0.4352 MPMGSIMERERTRKRPRLEWDVAPQPSFPQSQRICTVVGDEGIEKKHASPPRRNEDKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00046 385 SUPERFAMILY Protein kinase-like (PK-like) 57 382 IPR011009 -
Vivi3g00046 385 FunFam Serine/threonine-protein kinase AFC2 132 381 - -
Vivi3g00046 385 ProSiteProfiles Protein kinase domain profile. 56 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00046 385 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 57 382 - -
Vivi3g00046 385 Gene3D Transferase(Phosphotransferase) domain 1 110 381 - -
Vivi3g00046 385 Pfam Protein kinase domain 59 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00046 385 CDD PKc_CLK 57 381 - -
Vivi3g00046 385 Gene3D Phosphorylase Kinase; domain 1 57 136 - -
Vivi3g00046 385 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g00046 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vivi3g00046 385 SMART serkin_6 56 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00046 Vivi-Chr3 587127 590815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00046 61 382 Core Cell Cycle Gene Families AT3G48750 27.964 5.01e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g00046 Pkinase 2.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00046 K08287 - gmx:100782453 645.966