Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00045 ATGCCAATGGGTTCTATCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGAATGGGATGTAGCTCCTCAACCTTCATTTCCGCAGAGAATTTGCACGGTGGTTGGTGATGAAGGAATCGAGAAAAAGCATGCATCGCCTCCGAGAAGAAACGAAGATAAAATTCTCGGCAAAATGGGTGAAGGCACGTTTGGTCGAGTCTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCTATCAAGGTGATTAGAAGCATCCAGAAGTATCGCGACGCGGCAATGATCGAGGTTGATGTGCTGGAGCGACTTGTGAAGAGTGATGTGGGATGCTCACGTTGTGTGCAGATGCAGAATTGGTTTGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGGCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTGTGTAAAGCTTCCTAGTTGTAAGAGGGTTTTCTCAGATGAAACACAATTCAGGTGCTTGCCTAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCGTCTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCAACGCCGTGTGATTTGTGGAGTGTTGGATGTATTCTTTACGAATTATGCACGGGAGAAGCATTGTTTCAGACACATGAAAATTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTAAAAAGGCTAACAAGGGTGCAGAAAAATATTTCAAGCGTGGATCTCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTTGGTCATCTTAAGGACATTATATCACGTCATGTAGAGTGCTCGAGGTTCTTGTTAATTGATTTATTACATGGCTTATTGACTTATGATCCGGCCAAACGTATTACTGCTCGCCAGGCCCTTGATCACCGCTTCTTTAGGTTTACAACTTAA 1152 0.4349 MPMGSIMERERTRKRPRLEWDVAPQPSFPQRICTVVGDEGIEKKHASPPRRNEDKILGKMGEGTFGRVLECWDRQTRDYVAIKVIRSIQKYRDAAMIEVDVLERLVKSDVGCSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDCVKLPSCKRVFSDETQFRCLPKSSAIKLIDFGSTASANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILYELCTGEALFQTHENLEHLAMMERVLGPLPEHMVKKANKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISRHVECSRFLLIDLLHGLLTYDPAKRITARQALDHRFFRFTT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00045 383 CDD PKc_CLK 55 379 - -
Vivi3g00045 383 SUPERFAMILY Protein kinase-like (PK-like) 55 380 IPR011009 -
Vivi3g00045 383 Gene3D Phosphorylase Kinase; domain 1 55 134 - -
Vivi3g00045 383 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 55 380 - -
Vivi3g00045 383 Pfam Protein kinase domain 57 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00045 383 ProSiteProfiles Protein kinase domain profile. 54 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00045 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vivi3g00045 383 Gene3D Transferase(Phosphotransferase) domain 1 108 379 - -
Vivi3g00045 383 SMART serkin_6 54 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00045 383 FunFam Serine/threonine-protein kinase AFC2 130 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00045 Vivi-Chr3 587127 590815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00045 59 380 Core Cell Cycle Gene Families AT3G48750 26.687 5.48e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g00045 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00045 K08287 - gmx:100782453 641.343