Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00042 ATGGAAGAAAGTAGTGTAAAGGAGAAAACCCTACCACCCGGATTTCGATTTCATCCTACCGACGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGAAGAGCAATTACTGATATAGACCTCAACAAATTCGAACCATGGGACCTTCCAGCGAAAGCAAAGATGGGAGAAAAAGAATGGTACTTTTTCAGTATGAGAGATCGTAAATATCCAACAGGCGTAAGAACCAACCGAGCAACCAACACTGGATACTGGAAAACCACAGGGAAAGATAGAGAGATTTTCAACAGTGTTACCTCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAACTAGTTGGGTCATCCATGAATATCGTGTTCACTCTCAATCCACCTTCACAACAAACAAGCAGGAAGGATGGGTGGTTTGTAGGGTATTCAAGAAGAGTGGAAGTGGAAAAAAGTATCCTAGTAATAATTCAAACCCTACAAAAGCAGGAGTGAATCCTTATAGCATGCAAGAACTAGGTCATAATCATATGATGCTGAGAGATTCTTATTCTTCAGCTCCTCATTATAATTTCCTATACGGATGGAATCATAACTATTGTGCTAGTTCTGCTGCACCAACAGTGCAATACTCTTCTCAGTTGAACTATCCTACAAATATATTGCCAGCAACAACAGGAGGAGATGGAGGATTCAGCATTTCAGGGCTTAATTTGAATCTTGGAAATGGAGTAACTATGGCTGATCATGTGAATTCAATAAACATGAATATGATGAACTGTGTTGGTGCAGATCAGAATATTAATAATGTTGCAGTAGGTTATGGTAATGGTATGGAACATTGCACTGATCTTGACACTTACTGGCCTTGTTCCTACTGA 924 0.3929 MEESSVKEKTLPPGFRFHPTDEELITCYLINKISDSSFTGRAITDIDLNKFEPWDLPAKAKMGEKEWYFFSMRDRKYPTGVRTNRATNTGYWKTTGKDREIFNSVTSELVGMKKTLVFYKGRAPRGEKTSWVIHEYRVHSQSTFTTNKQEGWVVCRVFKKSGSGKKYPSNNSNPTKAGVNPYSMQELGHNHMMLRDSYSSAPHYNFLYGWNHNYCASSAAPTVQYSSQLNYPTNILPATTGGDGGFSISGLNLNLGNGVTMADHVNSINMNMMNCVGADQNINNVAVGYGNGMEHCTDLDTYWPCSY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00042 307 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Vivi3g00042 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 205 - -
Vivi3g00042 307 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vivi3g00042 307 FunFam NAC domain-containing protein 100-like 20 164 - -
Vivi3g00042 307 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Vivi3g00042 307 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00042 Vivi-Chr3 560779 562355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00042 2 304 NAC Transcription Factor Family AT2G24430 50.462 3.57e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g00042 NAM 2.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00042 - - lja:Lj1g3v2035130.1 369.392