Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00041 ATGGAAGAAAGTAGTGTAAAGGAGAAAACCCTACCACCCGGATTTCGATTTCATCCTACCGACGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGAAGAGCAATTACTGATATAGACCTCAACAAATTCGAACCATGGGACCTTCCAGCGAAAGCAAAGATGGGAGAAAAAGAATGGTACTTTTTCAGTATGAGAGATCGTAAATATCCAACAGGCGTAAGAACCAACCGAGCAACCAACACTGGATACTGGAAAACCACAGGGAAAGATAGAGAGATTTTCAACAGTGTTACCTCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAACTAGTTGGGTCATCCATGAATATCGTGTTCACTCTCAATCCACCTTCACAACAAACAAGGAAGGATGGGTGGTTTGTAGGGTATTCAAGAAGAGTGGAAGTGGAAAAAAGTATCCTAGTAATAATTCAAACCCTACAAAAGCAGGAGTGAATCCTTATAGCATGCAAGAACTAGGTCATAATCATATGATGCTGAGAGATTCTTATTCTTCAGCTCCTCATTATAATTTCCTATACGGATGGAATCATAACTATTGTGCTAGTTCTGCTGCACCAACAGTGCAATACTCTTCTCAGTTGAACTATCCTACAAATATATTGCCAGCAACAACAGGAGGAGATGGAGGATTCAGCATTTCAGGGCTTAATTTGAATCTTGGAAATGGAGTAACTATGGCTGATCATGTGAATTCAATAAACATGAATATGATGAACTGTGTTGGTGCAGATCAGAATATTAATAATGTTGCAGTAGGTTATGGTAATGGTATGGAACATTGCACTGATCTTGACACTTACTGGCCTTGTTCCTACTGA 921 0.392 MEESSVKEKTLPPGFRFHPTDEELITCYLINKISDSSFTGRAITDIDLNKFEPWDLPAKAKMGEKEWYFFSMRDRKYPTGVRTNRATNTGYWKTTGKDREIFNSVTSELVGMKKTLVFYKGRAPRGEKTSWVIHEYRVHSQSTFTTNKEGWVVCRVFKKSGSGKKYPSNNSNPTKAGVNPYSMQELGHNHMMLRDSYSSAPHYNFLYGWNHNYCASSAAPTVQYSSQLNYPTNILPATTGGDGGFSISGLNLNLGNGVTMADHVNSINMNMMNCVGADQNINNVAVGYGNGMEHCTDLDTYWPCSY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00041 306 FunFam NAC domain-containing protein 100-like 20 163 - -
Vivi3g00041 306 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Vivi3g00041 306 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vivi3g00041 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 204 - -
Vivi3g00041 306 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vivi3g00041 306 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00041 Vivi-Chr3 560779 562356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00041 2 303 NAC Transcription Factor Family AT2G24430 50.154 1.11e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g00041 NAM 2.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00041 - - gmx:100805060 369.007