Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00038 ATGGCGGCAACAGAATCCGATCTCGACGAGTTTCTCAATCTCGATTACGAACCTCGGTGTCCGAGTCTTGCCGATACGGAGGCGTTGATGAGCGCCGCTTTCCAAACTCTTTTACCGGATGTGGTAACTTCCTTTTCAACTTGTGGTGGAGTTACAGATTCTCAAAACCTCACTCCCAAACATTCCACCATCACTGCTACTATTGATTCTCAATCACCCCTTTATGGCACTGTTGGAAGCCCAGTTTCAGCCAATAAACCAACCAGCAGAGAGACTCATACCAAAGGAACAACAAGTGGTTCCTCTGATCCTTCAGATGAAGATGATGAATTAGGCCCTTGTGAACAAAGCACCAATCCACTCGATATCAAACGCCTTCGGAGAAAGGTTTCCAATCGCGAATCGGCCAGACGATCAAGGCGAAGAAAACAAGCTCATTTGTCTGAACTTGAGTCTCAGGTTGAAAAACTGAAACTGGAAAATGCAACCCTATACAAACAGTTTACAAATACTAGCCAACAATTTCATGAGGCTGATACAAATAACAGAGTGCTAAAATCAGATGTTGAAGCTTTAAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTAGAAGCTCTTTCACCACATCATTAAACAATCAGTTTTTTCAGAATCAATGTCAAATAAGCACACCGCCGCAACTCAATGTGACATCTTTGCGCCGTGCGCCACATGTTTCACCAACCATAAATGTCCAGCAAGGAAATGGTGCCTCGTACGGTGGTGTCACAGTTGGTGAATATAATACAAATCTTCTGGGAAACTTGGACATGAGTAACTACAACGACTACATTGACAATGGAGTCTTAAGCAATGCTATGAGTTGTGTAACTACTACCTGGCCCTAA 891 0.4355 MAATESDLDEFLNLDYEPRCPSLADTEALMSAAFQTLLPDVVTSFSTCGGVTDSQNLTPKHSTITATIDSQSPLYGTVGSPVSANKPTSRETHTKGTTSGSSDPSDEDDELGPCEQSTNPLDIKRLRRKVSNRESARRSRRRKQAHLSELESQVEKLKLENATLYKQFTNTSQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFFQNQCQISTPPQLNVTSLRRAPHVSPTINVQQGNGASYGGVTVGEYNTNLLGNLDMSNYNDYIDNGVLSNAMSCVTTTWP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00038 296 PANTHER BASIC LEUCINE ZIPPER 63 51 250 - -
Vivi3g00038 296 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 122 185 IPR004827 GO:0003700|GO:0006355
Vivi3g00038 296 Coils Coil 182 202 - -
Vivi3g00038 296 MobiDBLite consensus disorder prediction 71 101 - -
Vivi3g00038 296 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 127 142 IPR004827 GO:0003700|GO:0006355
Vivi3g00038 296 Pfam bZIP transcription factor 123 174 IPR004827 GO:0003700|GO:0006355
Vivi3g00038 296 SUPERFAMILY Leucine zipper domain 124 175 IPR046347 GO:0003700|GO:0006355
Vivi3g00038 296 CDD bZIP_plant_GBF1 125 176 IPR045314 GO:0003700|GO:0006355
Vivi3g00038 296 MobiDBLite consensus disorder prediction 71 149 - -
Vivi3g00038 296 Coils Coil 133 167 - -
Vivi3g00038 296 FunFam BZIP transcription factor 122 173 - -
Vivi3g00038 296 Gene3D - 123 179 - -
Vivi3g00038 296 SMART brlzneu 120 184 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00038 Vivi-Chr3 516547 520644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00038 80 296 bZIP Transcription Factor Family AT5G24800 47.964 6.92e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00038 bZIP_1 9.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00038 K25784 - gmx:780555 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00038 3 516547 520644 Vivi3g00038 3 516547 520644 ECH
Vivi3g00038 3 516547 520644 Vivi4g04932 4 179352875 179357433 PCT