LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g00020	ATGTGGTTGCCAAAGAATCAATCTGATAAGAAGGATGGTGTAAATGGATTAATAGCAGTGGCGATAGACAAAGAAAAGGGAAGCCAAAATGCACTCAAATGGGCTATCGACAATCTCCTCGCACGAAACGCAACTGTAATTCTCATCCATGTCAAGGTTTTGGCGTCTTCTCTTTCTCCATCGCCTTCGATTTTCACCACAAGCAAATCTACAAGGGCCGCGATAAACGCTAATGGTAATGACAGTTTAACAATAAGCAAAGAACCAGAAGCTCACAAAAACATTTTCCTACCATATCGCGTCTTCTGTACGCGCAAAGATATACAATGCAAGGATGTTCTACTAGAAGATTCAGATGTAGCAAAAGCATTGATTGAATATGCTTCTCAGGCAGGAATCGAGCATCTGGTTCTTGGATCTTCGGCAAAAGCCGGTTTGCTCAAAAGATTCAAGGTATCAGATGTTTCTGGAACAGTGGCAAAAGGCGCACCGGATTTCTGTACAGTCTATGTCATTGGAAAAGGAAAGATTCAATCGATGCGATCTGCTTCTCGTCCTGCTCCAAGCATTTCCCCCCTACAAGTTAATGAAACTAGTATACAAGACCAACCAGACATAAATTTTGCGTCGGAACAAAGTGTAAGAGAACAAGAAAGGAATTCTTTCGATGCTTCGCAGGATGGAATCGATTTATTCAGGTCACCGTTCACCAGGAAAGGTTACAATACGAAACAATATTTGGAAAATTCAAAGGCGGATGGTGATATATCTTTTGTGAGTTCTGGAAGGTCGAGTACCGACCGCATGTTGCCTCCATTGTATAACAGCTCGGAGACGGGCTCTAGGATATCATTTAGCTCGGACCAAGATTTAAACTACAGCTTTGAGTCTATGTTTCAAGGAAGGAAGTCTATAGATTCCACCAATCTTGCTGAATTTTCATCACTAATGTTCGATAACGAAAGGCTTTCATCTTCTTCATCGCAAGCCGATGATATGGAGGCTGAAATGAGGAGATTAAAGTTGGAGCTCAAGCAAACAATGGAAATGTACAACACAGCTTGTAAAGAAGCACTCACGGCACAACAGAAGGCAATAGAACTTCAAAAGTGGAAGTTAGAAGAAGAAAGGAGATTGGAAGAGGCGAGGGTAGCCGAGGAAGCTGCATTGGCAATCGCTAAAAAGGAGAAAGAAAAATCTAAAGCAGCCATTGAAGCTGCGGAAGCGCAAAAGAGGATAGCGGAACTCGAAGCACATAAGAGACTTCAAGCAGAAATGAAAGCACTTAGAGAAGCAGAAGAGAAAAGAAAAGTAATGGATGCTTTGGTAAATGTAGATGTTAGATATAGAAAGTATACAATAGAGGAGATTGAAGCTGCAACAAATTTTTTCTCACAATCGCTCAAGATCGGAGAAGGAGGATACGGTCCGGTTTTTAAGTGTCTTCTGGACCATACACCTGTTGCAGTCAAGGTTCTTCGTCCTGATGCGGCACAAGGACGGTCGCAGTTTCAACGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCTTAGGAGCCTGTCCGGAATACGGCTGCCTAGTGTATGAGTACATGTCAAATGGAAGCTTGGACGATTGCCTATTTTGTCGAGGAAACACTCCTCCGCTTTCTTGGCAGCTAAGGTTCAAAATTGCAGCCGAAATAGGCACCGGTTTGTTGTTCCTTCACCAGACAAAACCAGAACCTATAGTCCACAGGGACTTAAAACCAGGAAACATCTTACTAGACAGAAACTTCGTATCCAAAATCAGCGATGTAGGTTTGGCAAGACTAGTTCCACCGTCCGTCGCTGACAGCGTGACGCAATACCGGTTGACAGCAACAGCTGGAACGTTCTGTTATATCGATCCGGAGTATCAACAGACAGGAATGTTGGGTGTGAAATCAGATATATACTCACTAGGGATCATTTTCCTTCAAATTTTGACAGCAAGATCACCAATGGGATTAGCACATAATGCTCAAAAAGCCATTGAAAATGGAACTTTTACCGACATGTTGGATCCTGCGATAACTGATTGGCCAATGGAGGCTGTTATGAGTTTTGCAAATATAGCAGTCAACTGCGCGGAGTTAAGGCGAAAAGATAGACCTGATCTTGGTAAGGTTGTGCTTCCAGAACTTAACAGGTTGAGAGTACTTGCTGATAATAGTAACCAAAATTCAGCACCAAACAGTCCTAATTCGACGAATGGTTCCCATGAGAGACAAGTTTCACTGCCGCTGGATGAAAACTGTCCTCTATCTCCTCACTCGGAGGAGATTCGAAGAAACACAACAGTTGGTTTTTGA	2349	0.4295	MWLPKNQSDKKDGVNGLIAVAIDKEKGSQNALKWAIDNLLARNATVILIHVKVLASSLSPSPSIFTTSKSTRAAINANGNDSLTISKEPEAHKNIFLPYRVFCTRKDIQCKDVLLEDSDVAKALIEYASQAGIEHLVLGSSAKAGLLKRFKVSDVSGTVAKGAPDFCTVYVIGKGKIQSMRSASRPAPSISPLQVNETSIQDQPDINFASEQSVREQERNSFDASQDGIDLFRSPFTRKGYNTKQYLENSKADGDISFVSSGRSSTDRMLPPLYNSSETGSRISFSSDQDLNYSFESMFQGRKSIDSTNLAEFSSLMFDNERLSSSSSQADDMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAIELQKWKLEEERRLEEARVAEEAALAIAKKEKEKSKAAIEAAEAQKRIAELEAHKRLQAEMKALREAEEKRKVMDALVNVDVRYRKYTIEEIEAATNFFSQSLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLDDCLFCRGNTPPLSWQLRFKIAAEIGTGLLFLHQTKPEPIVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADSVTQYRLTATAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARSPMGLAHNAQKAIENGTFTDMLDPAITDWPMEAVMSFANIAVNCAELRRKDRPDLGKVVLPELNRLRVLADNSNQNSAPNSPNSTNGSHERQVSLPLDENCPLSPHSEEIRRNTTVGF	782

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g00020	782	FunFam	U-box domain-containing protein 51	537	737	-	-
	Vivi3g00020	782	Coils	Coil	356	426	-	-
	Vivi3g00020	782	CDD	STK_N	17	175	-	-
	Vivi3g00020	782	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	582	594	IPR008271	GO:0004672\|GO:0006468
	Vivi3g00020	782	Gene3D	HUPs	17	172	IPR014729	-
	Vivi3g00020	782	PANTHER	OS02G0152300 PROTEIN	18	748	-	-
	Vivi3g00020	782	Coils	Coil	323	350	-	-
	Vivi3g00020	782	SUPERFAMILY	Protein kinase-like (PK-like)	447	723	IPR011009	-
	Vivi3g00020	782	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	172	-	-
	Vivi3g00020	782	Gene3D	Phosphorylase Kinase; domain 1	443	536	-	-
	Vivi3g00020	782	SMART	serkin_6	464	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g00020	782	Pfam	Universal stress protein family	18	164	IPR006016	-
	Vivi3g00020	782	MobiDBLite	consensus disorder prediction	734	782	-	-
	Vivi3g00020	782	Gene3D	Transferase(Phosphotransferase) domain 1	537	751	-	-
	Vivi3g00020	782	MobiDBLite	consensus disorder prediction	734	757	-	-
	Vivi3g00020	782	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	436	536	-	-
	Vivi3g00020	782	ProSiteProfiles	Protein kinase domain profile.	464	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g00020	782	Pfam	Protein kinase domain	466	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g00020	Vivi-Chr3	253111	257228	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g00020	1	760	Receptor kinase-like Gene Family	AT1G78940	55.120	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vivi3g00020		Pkinase	8.3e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g00020	-		-	gmx:100803867	1043.49