Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00019 ATGCAACAGAGACTCAAGTTGCAGCAACAACAACAGGCACTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTATCATCACCCTGGCATGCTTGCCGCTGCCGCTATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCCGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCTTCTTATGGTTTTGTTGACTACCATGATCGAGCATCCGCAGCACTAGCAATAATGACATTGCATGGGCGACAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGCAGGGAGGATACCTCAGGACACTTCAATGTATTTGTCGGTGATCTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGTTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACGGGTAAATGGCTGGGAAATAGACAAATAAGATGCAATTGGGCAACTAAAGGTGCTGGTGGCAGCTCAAATGAAGAGAAGATCAATGACAACCAAAATGCTGTTGTGCTTACAAATGGGTCATCAGATGGAGGTCAAGATAACAACAATGAGGATGCTCCTGAAAATAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTTACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGTGCTGGTGTACTTGAGGAGGTTCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCACTGGCTATTCAGATGGCTAATGGAAGACCAGTTCGCGGGAAGACGATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCTTCAAATCCATTACCTCCTCCTGCTGCACAACCGTATCAAATACTTCCTACTGCAGGTATGAATCAAGGCTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAGCTGGCCTTGAGTCAGGCCGCTGTATCTGGCCTTTCCGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCCGCTTCAATGGGCATTAATTCTGCTGCGTCTCAAGCCATGTATGATGGATATACTGGTAATTCGTCGAGACAGCAGCTTATGTACTATCGTTGA 1317 0.4548 MQQRLKLQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00019 438 FunFam Nucleolysin TIAR-like protein 1 141 - -
Vivi3g00019 438 FunFam Oligouridylate-binding protein 1C 242 343 - -
Vivi3g00019 438 Gene3D - 142 222 IPR012677 -
Vivi3g00019 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 339 IPR000504 GO:0003723
Vivi3g00019 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 47 342 - -
Vivi3g00019 438 CDD RRM2_PUB1 142 221 - -
Vivi3g00019 438 MobiDBLite consensus disorder prediction 239 262 - -
Vivi3g00019 438 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Vivi3g00019 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Vivi3g00019 438 MobiDBLite consensus disorder prediction 330 354 - -
Vivi3g00019 438 SUPERFAMILY RNA-binding domain, RBD 137 239 IPR035979 GO:0003676
Vivi3g00019 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Vivi3g00019 438 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Vivi3g00019 438 Gene3D - 1 141 IPR012677 -
Vivi3g00019 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 333 IPR000504 GO:0003723
Vivi3g00019 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Vivi3g00019 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Vivi3g00019 438 SMART rrm1_1 59 128 IPR000504 GO:0003723
Vivi3g00019 438 SMART rrm1_1 266 335 IPR000504 GO:0003723
Vivi3g00019 438 SMART rrm1_1 144 217 IPR000504 GO:0003723
Vivi3g00019 438 Gene3D - 243 343 IPR012677 -
Vivi3g00019 438 FunFam Nucleolysin TIAR-like protein 142 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00019 Vivi-Chr3 244432 252086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00019 47 339 Eukaryotic Initiation Factors Gene Family AT1G22760 25.329 4.26e-19 88.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00019 3 244432 252086 Vivi3g00019 3 244432 252086 ECH