Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00016 ATGAAGCTCAAAAATGAGAAACTAGTCAGGTTCTCTAATGATGGAAAGCTTAATCTTGAGAAGCCAATGCAAGTTTACAAATTTCAGAAAATTCTTAATCCGAACGATATTGATATTGATACTGATAATGATAAGAACGGAATGAATATCAAGTCTCCGACTTTTGGAAAGTTTAAGGTTTTTCAAGAAAATCACGAACCATGGAAGAAGAGAATTCTTGATCCGGGAAGTGATTTATTTCTCGAGTGGAAAAGAGCTTTCTTGTTTTCTTCCATACTATCACTTTTTGTTGATCCGTTGTTTTTCTACCTCCCGTCTGTATCAGTAGAAACTGATAATAAGAATTCCTCGTGCATGGTTACTGATTTGAATTTAGGAATCATCGTTACATGTTTCCGGACATTCGCCGATGTTTTCTATCTGCTGAACATGGTCATTAAGTTTAGGACAGCCTTTGTGTCACCGAGTTCAAGGGTTTTTGGAAGAGGCGAGCTTGTCATGGACCCGAGTTTGATCGCGAGGCGGTATTTGAGATCGGAGTTTTTCCTAGATCTTTTAGCTACATTGCCTCTTCCACAGATTGTGATTTGGTTTATAATGCCAGCAATTCGAAGCTCTCATGCCGATCATACCAACAACGCGCTAGTATTGATTGTTCTTCTTCAATATGTTCCTAGATTGTATATGATTTTTCCTTTAAGTTCTCAGATTGTTAAAGCGACCGGTGTTGTCACAAAGACGGCTTGGGCCGGAGCTGCTTATAATCTTTTACTTTACATGTTAGCTAGTCATGTGTTGGGGGCATCATGGTATTTGCTGTCAATCGAAAGACACGCGACATGCTGGAAATCTGAATGCAGAGACGAAAACTTACCTGTGAAATGTGTTCTCGACTACCTCGATTGCAGTAGTATAAACGATGCCGGTCGCGTGAAATGGATGAATACTACTTCTGTGTTTAGTAACTGTAATCCTGAAAGTAGCACAGATTTTAATTACGGAATTTTCGGAAACGCAGTCCAAAATAATGTTCTTTCCTCTGTGTTTATAGAGAAGTACCTCTATTGTTTGTGGTGGGGATTGCAGAATTTGAGTTCCTATGGCCAGAGTTTGACTACAAGCACATTTGTTTGGGAGACTGCATTTGCAATACTCATAGCTATCTTAGGTTTGGTTTTGTTTGCACATTTAATTGGTAACATGCAGACATATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACGGAGGAGTGGATGAAGCATCGCCAACTCCCGGAGTTTCTTAGGGAGCGTGTCCGGAGATTTGTTCAGTATAAGTGGCTTGCGACTCGAGGTGTTGATGAAGAAACTATCCTAAGAGGCCTCCCTACAGATCTTCGTAGAGATATTCAACGTCACCTTTGCTTAGACCTAGTTCGAAGGGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGATTGGTATCATCTTTGAGTACGCAAGGCACATACATTGTCAGAGAAGGAGATCCAGTTACCGATATGCTTTTTATCATCAGAGGGAAACTCGAAAGCTCGACCACAAACGGTGGCAGAACCGGTTTCTTTAACTCTATTACCTTGAGACCAGGCGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCAACAAGAACAGTTAAAGCCCTGGTTGAAGTTGAAGCCTTTGAACTTAGAGCAGAAGACCTTAAATTTGTAGCAAATCAGTTTCGACGTCTTCATAGCAAGAAGTTGCAGCATACGTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCTTGTTTCATTCAGGTCGCTTGGCGCCGGTTCAAGAAGCGAGTTTTGGCAAATAGCCTTAGCCTGAGAGAATACAAATCCTTCATCGATGAACAAGCAAGAAATCGAATGGAACTCGAGAAAGAAGAGCGCGGTAACACTGCACAAGTAAAACAGAATCTTGGTGTCACTATATTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGAGTTCAGAAGATCAAGGATGTAGAAATGCTCAAGTTGCAAAAGCCAGAAGAGCCAGATTTCTCAGTAGAGCATGAAGATGATTGA 2163 0.4133 MKLKNEKLVRFSNDGKLNLEKPMQVYKFQKILNPNDIDIDTDNDKNGMNIKSPTFGKFKVFQENHEPWKKRILDPGSDLFLEWKRAFLFSSILSLFVDPLFFYLPSVSVETDNKNSSCMVTDLNLGIIVTCFRTFADVFYLLNMVIKFRTAFVSPSSRVFGRGELVMDPSLIARRYLRSEFFLDLLATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRDENLPVKCVLDYLDCSSINDAGRVKWMNTTSVFSNCNPESSTDFNYGIFGNAVQNNVLSSVFIEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPEFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTDMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFELRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQVAWRRFKKRVLANSLSLREYKSFIDEQARNRMELEKEERGNTAQVKQNLGVTILASRFAANTRKGVQKIKDVEMLKLQKPEEPDFSVEHEDD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00016 720 CDD CAP_ED 484 615 IPR000595 -
Vivi3g00016 720 Gene3D Helix hairpin bin 412 475 - -
Vivi3g00016 720 SMART cnmp_10 484 615 IPR000595 -
Vivi3g00016 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 713 - -
Vivi3g00016 720 Coils Coil 645 665 - -
Vivi3g00016 720 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Vivi3g00016 720 SUPERFAMILY Voltage-gated potassium channels 78 406 - -
Vivi3g00016 720 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
Vivi3g00016 720 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g00016 720 PRINTS EAG/ELK/ERG potassium channel family signature 397 406 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g00016 720 PRINTS EAG/ELK/ERG potassium channel family signature 447 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g00016 720 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g00016 720 PRINTS EAG/ELK/ERG potassium channel family signature 379 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g00016 720 Gene3D - 106 410 - -
Vivi3g00016 720 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Vivi3g00016 720 SUPERFAMILY cAMP-binding domain-like 414 606 IPR018490 -
Vivi3g00016 720 Pfam Ion transport protein 83 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi3g00016 720 ProSiteProfiles cAMP/cGMP binding motif profile. 484 567 IPR000595 -
Vivi3g00016 720 Gene3D Jelly Rolls 482 602 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00016 Vivi-Chr3 204520 210109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00016 10 716 Ion Channels AT2G24610 69.124 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00016 K05391 - gmx:100803334 1214.91