Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00005 ATGGACGCGGACGGCGGCGAGGAAGATTCTCGCCACGGAGGTTCGGCAGCAACTCATCAAACCACCGATGAACTCATCGCCAGGTGCATAGCTCCCGTCAAGACCGAATTCCTCCGTCCTCCTCCCGACCGAACTTCCTCCCAAAACGACGATGTTTCAATCCCCAAAGACAAAGCCCCCGTTCTCGCCAAAGAGAAGAAATCCAAACGCCAACTCAAACGCGAACGTCGTCAGGATCAAAAATCAACGAAAAATCTCTGTCCTGAAATTTCCAAGTCTGGTGATGTTAATTCGTGTCGTTATCAAGATAAGTGTCGTTTTAGCCATGATATAGAAGCTTTTAAGGAACAGAAACCGGCTGATTTGGAGGGTGAATGTCCTTTTTTGAAATCTGAAGGGTCTTGTCCTTATGGGCTATCGTGTAGATTTTTAGGTACTCATGAAGAAGGTAAGCCTTTAGCTTCAAATGGATTGGAGAGACGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGACTTTCCCCAAGGCTGATGCAGTACTCAAAAGCCTTGGTCTCTTGTCTAAGTCAAAAGGGAATGCCTTGGAAAACAAAGATGGTGGTGACAAATGTGTTCAGTCTGATGACATTGGTTCTTGTGTGGTTACATCTGAGTTGGAAAACAAAGATGGTGTCGACAAATGCCATCAGTCTGATGATGATGATTCTTTTGGGGTGATCGTTGACTCGGATTCTAAGTTAGAAGGCTCTGTAGAGGTTCTAAAAGATGCCGATGTCATCAATAGAGAAATTGAATCTGATGTACATTGTCCTCTGAAGAGAAGAAAAACTGCAGAAGATTGTGGTGTTGAGGAGACAAAAACTGAAGGTGTGAATGTTGCTGGTCAAAATATTGACGGAAGCTGCATAAGATCTGAACCAGAGGCAGGAACTGAAGCTATAACCCCAGAAACTGATATAAGCTTGAAATCTCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGGATAAGTTGTATCTTGCCCCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGCGCATATCCAGATTCTGTGGCGCGAACAGTTGAACTAATAGAAAAGGAATGTTCAGTAGATTTCATTGATATAAATATGGGCTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAATGTTGTAGAAGTCGCTTCAGGCACAGTTGATATACCAATAACTATCAAGGTTCGGACAGCTTATTTTGAAGGGAAGAACCGTATTGACTCAGTGATAGCTGACTTTAGCTCTTGGGGAACTAGTGCAGTGACAATACACGGTAGGTCACGGCAACAACGCTATAGCAAGCTTCCTGACTGGGATTACGTATATCAATGTACCAAGAAAGCTCCTAAAAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGAAGACTGGAACAAGCACAAAACTGAATGCCCCGAGCTTGCTACATGCATGATTGCCCGTGGTGCACTGATTAAACCTTGGATATTTACAGAGATCAAGGAACAGCGACATTGGGACATCAGTTCCGGCGAGCGGTTAAATATTTTCAAAGATTTTGTGCATTTTGGACTTCAACATTGGGGTTCCGATACCAAAGGAGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACCTGTAGGTACATACCTGTTGGTCTTATGGAAGTTGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTACGGGCGTGATGACCTCGAGACACTGATGGCCTCAGACTCCGCAGCTGACTGGGTACGATTATCTGAGATGTTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGACAGAGCAGAAAATGGCTAA 2094 0.4351 MDADGGEEDSRHGGSAATHQTTDELIARCIAPVKTEFLRPPPDRTSSQNDDVSIPKDKAPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKEQKPADLEGECPFLKSEGSCPYGLSCRFLGTHEEGKPLASNGLERRSEVNGFSKDVQKLLWKNKMTFPKADAVLKSLGLLSKSKGNALENKDGGDKCVQSDDIGSCVVTSELENKDGVDKCHQSDDDDSFGVIVDSDSKLEGSVEVLKDADVINREIESDVHCPLKRRKTAEDCGVEETKTEGVNVAGQNIDGSCIRSEPEAGTEAITPETDISLKSHSREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDSVARTVELIEKECSVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNVVEVASGTVDIPITIKVRTAYFEGKNRIDSVIADFSSWGTSAVTIHGRSRQQRYSKLPDWDYVYQCTKKAPKNLQVVGNGDVFSFEDWNKHKTECPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLMEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00005 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 341 583 - -
Vivi3g00005 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 691 - -
Vivi3g00005 697 ProSiteProfiles Zinc finger C3H1-type profile. 81 112 IPR000571 GO:0046872
Vivi3g00005 697 SMART c3hfinal6 82 111 IPR000571 GO:0046872
Vivi3g00005 697 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Vivi3g00005 697 Pfam CCCH-type zinc finger 86 110 IPR041367 -
Vivi3g00005 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 77 156 - -
Vivi3g00005 697 ProSiteProfiles Zinc finger C3H1-type profile. 125 150 IPR000571 GO:0046872
Vivi3g00005 697 Gene3D - 76 155 - -
Vivi3g00005 697 CDD DUS_like_FMN 345 580 IPR035587 -
Vivi3g00005 697 ProSitePatterns Uncharacterized protein family UPF0034 signature. 429 447 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vivi3g00005 697 Pfam Dihydrouridine synthase (Dus) 348 582 IPR035587 -
Vivi3g00005 697 SUPERFAMILY FMN-linked oxidoreductases 345 658 - -
Vivi3g00005 697 MobiDBLite consensus disorder prediction 1 89 - -
Vivi3g00005 697 Gene3D Aldolase class I 341 583 IPR013785 -
Vivi3g00005 697 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00005 Vivi-Chr3 63075 68149 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g00005 Dus 7e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00005 K05544 - gmx:100783494 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00005 3 63075 68149 Vivi3g00005 3 63075 68149 ECH