Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00004 ATGGCTTCAAACTCTGCTCTCTCCAACCCCAAACTCTCTTTCTCTTCTTTTTCTTCTTCTTCTTCTTCCTCTCTCAACCCTTCTTTTTTCCACAACAAACTTCTCTTCTCAAAACCAAACCTCAAAACCACACTCTCCCATTCCCGCAACCTCAAACCACCCTCCTCATCCACCAACACCAACCCTATCACCACAGACACATTCCCTTTCCATAACCTAACCGCCAACGATAACGAAAAGCCTCGCGAAGAATGCGGCGTCGTCGGTATCTACGGCGACGCCGAAGCTTCTCGCTTATGCTACCTAGCTCTCCACGCTCTTCAACATCGTGGTCAAGAAGGTGCTGGAATTGTCTCCGTTAATAATAACGTCCTTATAACCGTCACCGGCGTTGGACTAGTCTCCGAAGTTTTTAACGATACGAAACTCCGGCAATTACCGGGAACTTTAGCCATCGGTCATGTTCGTTACTCTACAGCAGGCCAATCTATGCTGAAAAACGTTCAACCTTTTGTTGCAGGTTACCGTTTTGGTTCCGTTGGTGTTGCTCATAACGGTAATTTTGTTAACTACCGTTCCTTGAGAAACAAGCTTGAAGAATCTGGTTCGATTTTTAATACGAGTTCTGATACTGAGGTTATTCTTCATCTTATCGCGACTTCGAATCAGAAGAGTTTTATAACTAGAGTCATTGATGCTTGTGAGAAGGTGAAAGGTGCTTATTCGCTTGTGTTTGTTACTGAGGATAAGCTTGTTGCTGTGAGAGATCCTTACGGTTTTCGGCCTTTGGTCATGGGAAGAAGAAGTAATGGTTCTGTTGTTTTCGCTTCGGAAACGTGTGCGCTTGATTTGATTGAAGCTAGTTATGAAAGAGAGGTTTATCCTGGTGAAATTGTGGTTGTGGATGAAACTGGTGTTCAATCTTATTCTCTGGTTTTTCATCCAGAGCCGAAACAATGTATTTTTGAGCATATTTATTTCTCATTGCCGAATTCGGTTGTTTTTGGGAAATCTGTTTATGAATCGAGAAGATTGTTTGGTGAGATATTGGCTACTGAGAATCCTGTTGATTGTGATGTTGTTATAGCTGTTCCTGATTCTGGTGTTGTTGCTGCGCTTGGCTATGCTGCGAAAGCTGGTGTTCCTTTTCAGCAGGGTTTGATTAGGTCACACTATGTTGGTAGAACTTTCATTGAGCCGTCGCAGAAGATTAGAGATTTTGGTGTGAAGTTGAAGCTTTCGCCGGTTCGTGCTGTTCTTGAAGGTAAAAGGGTTGTGGTTGTGGATGATTCTATTGTGAGGGGGACAACATCATCTAAAATTGTGAGGCTGTTAAAGGAAGCTGGTGCTAAAGAAGTTCATATGAGAATTGCATGTCCACCAATTATTGGGTCTTGTTATTATGGTGTGGATACACCTAGCCCTGATGAGTTGATATCTAATAGGATGAGTGTGGATGAGATTAAGGAGTTTATTGGTTGTGATTCACTTGCTTTTTTGCCTATGGATAGTTTGAAGAAGCTGTTGGGTGATGATTCTTCTAATTTCTGTTATGCTTGTTTTACTGGGAATTATCCTGTTGAGCCTAATGAACTCAAAGTCAAGAAGGTTGTGGATGGTGGATTAAATGGATCTGTTCAAGGTAACCCAAATCAGAAAGAGGTGAAGATTGTTGGAGTTTGA 1683 0.4219 MASNSALSNPKLSFSSFSSSSSSSLNPSFFHNKLLFSKPNLKTTLSHSRNLKPPSSSTNTNPITTDTFPFHNLTANDNEKPREECGVVGIYGDAEASRLCYLALHALQHRGQEGAGIVSVNNNVLITVTGVGLVSEVFNDTKLRQLPGTLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNFVNYRSLRNKLEESGSIFNTSSDTEVILHLIATSNQKSFITRVIDACEKVKGAYSLVFVTEDKLVAVRDPYGFRPLVMGRRSNGSVVFASETCALDLIEASYEREVYPGEIVVVDETGVQSYSLVFHPEPKQCIFEHIYFSLPNSVVFGKSVYESRRLFGEILATENPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSPDELISNRMSVDEIKEFIGCDSLAFLPMDSLKKLLGDDSSNFCYACFTGNYPVEPNELKVKKVVDGGLNGSVQGNPNQKEVKIVGV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00004 560 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 85 526 IPR029055 -
Vivi3g00004 560 CDD PRTases_typeI 342 480 IPR000836 -
Vivi3g00004 560 Pfam Phosphoribosyl transferase domain 342 455 IPR000836 -
Vivi3g00004 560 SUPERFAMILY PRTase-like 320 531 IPR029057 -
Vivi3g00004 560 PIRSF Pur1 81 540 IPR005854 GO:0004044|GO:0009113
Vivi3g00004 560 Pfam Glutamine amidotransferase domain 163 282 IPR017932 -
Vivi3g00004 560 CDD GPATase_N 85 335 IPR035584 -
Vivi3g00004 560 Gene3D - 344 508 IPR029057 -
Vivi3g00004 560 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 85 304 IPR017932 -
Vivi3g00004 560 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 85 309 IPR029055 -
Vivi3g00004 560 MobiDBLite consensus disorder prediction 45 77 - -
Vivi3g00004 560 Hamap Amidophosphoribosyltransferase [purF]. 84 525 IPR005854 GO:0004044|GO:0009113
Vivi3g00004 560 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 83 532 - -
Vivi3g00004 560 NCBIfam amidophosphoribosyltransferase 85 526 IPR005854 GO:0004044|GO:0009113
Vivi3g00004 560 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g00004 560 MobiDBLite consensus disorder prediction 45 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00004 Vivi-Chr3 60437 62946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00004 60 547 PRT Gene Family AT4G34740 79.637 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00004 K00764 - gmx:100791919 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00004 3 60437 62946 Vivi3g00004 3 60437 62946 ECH