Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi39g00008 ATGTTTCCTTCACTAGTTTCTGCGACACCTAATTCTGTCATGGTTCTTGAGACAAATCTCGGAGAAAACTATGCCTCACAACAACCAATGCACTTGCAAGAAAACTACTTAAAACCAAGGATGAAAGACGAGCTTCCTAATTTTGATGCTCATTCCTCTCAGGGTAATTTCTTGCAAGATTTTCACCATATTGATCAGTTTCACGTGCATGGCTCTTCGTCGTCTAATCATGTTTTTGGGGTCCAAACTCAAACTTTTGATCCTTTTGGGAATGAACAATGTGCAAATACAGGTTTTGAAGTTTATAGTGACAAGTCTTTTGCTGAGAACAAGTTTATTGATAATTTTCAATATGATGGTTATAGTTTGAATGTTCCTAGAAGGAATCATTTTGATCTTATGGTTGAAAACCAAAGCTATTTTCCGTTTAATAATCCTTCGGAAACCAAACCGATTGTACCAGATGATGAAGTTTCAAGCATAGCACCAACAAGTTATTACCAAAGAGGTGATTTGAATAGAAACAACAGGCTACTATCTCCGACCACAAGAAGAGCGTTTAAAGCGAAGAAGAAATCAAGCATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGAATGTTGATTCAGATGGTGGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAGATTGCCTGGAAGAATAGGGAAACAGTGTAGAGAAAGATGGCATAACCATTTAAGGCCTGACATTAAGAAAGATATATGGACTGATGAAGAGGACAAGATATTGATCCAAGCTCATATTGAAATAGGAAATAAATGGGCAGAAATTGCGAAAAGATTAGCCGGAAGAACTGAAAACTCAATCAAAAACCATTGGAACGCAACAAAGAGAAGACAGTATTCGAAAAGAAAATGCCGCTCAAAGCATCCTAGAGGCACACTTCTGCAGGAATATATCAAGAGCTTAAACTTAGACCAAAATCCACCAAGAGACTTTCGAAAAAAATCTTCTTCTAATGCTAAGAAAATCATTACTTGCAGCACAAGCAAAGAAGCAATACAACAAAATCCTCAACCACAGATCATGAATCAGTTTTGTCCCAATGACCAATCAGTCCCGAACTACGAGTTTAATGATTTTTGTTTGGAGGATAATTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGATATGGCAAGTGTTCCTACAATGGGTGAGAAAGAATTTGATGAAAAACTATGTGATGATAAGGGAGGTATACAAGTTGTTAATCTTGATGAACATCAATTTGAGACTCAGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATATCTCAGGTTAATCAAACTATTTGA 1362 0.3708 MFPSLVSATPNSVMVLETNLGENYASQQPMHLQENYLKPRMKDELPNFDAHSSQGNFLQDFHHIDQFHVHGSSSSNHVFGVQTQTFDPFGNEQCANTGFEVYSDKSFAENKFIDNFQYDGYSLNVPRRNHFDLMVENQSYFPFNNPSETKPIVPDDEVSSIAPTSYYQRGDLNRNNRLLSPTTRRAFKAKKKSSIVKGQWTVDEDRMLIQMVEQYGMRKWSHIAQRLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHIEIGNKWAEIAKRLAGRTENSIKNHWNATKRRQYSKRKCRSKHPRGTLLQEYIKSLNLDQNPPRDFRKKSSSNAKKIITCSTSKEAIQQNPQPQIMNQFCPNDQSVPNYEFNDFCLEDNLFEEGCGIDSLLDDMASVPTMGEKEFDEKLCDDKGGIQVVNLDEHQFETQIEVKKEMDLVEMISQVNQTI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi39g00008 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 247 IPR017930 -
Vivi39g00008 453 ProSiteProfiles Myb-like domain profile. 192 243 IPR001005 -
Vivi39g00008 453 CDD SANT 252 294 IPR001005 -
Vivi39g00008 453 Pfam Myb-like DNA-binding domain 197 243 IPR001005 -
Vivi39g00008 453 Pfam Myb-like DNA-binding domain 252 291 IPR001005 -
Vivi39g00008 453 FunFam Transcription factor MYB119 250 314 - -
Vivi39g00008 453 ProSiteProfiles Myb-like domain profile. 244 294 IPR001005 -
Vivi39g00008 453 CDD SANT 200 243 IPR001005 -
Vivi39g00008 453 SMART sant 196 245 IPR001005 -
Vivi39g00008 453 SMART sant 248 296 IPR001005 -
Vivi39g00008 453 PANTHER MYB PROTEIN-RELATED 171 346 - -
Vivi39g00008 453 Gene3D - 250 315 - -
Vivi39g00008 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 298 IPR017930 -
Vivi39g00008 453 Gene3D - 196 249 - -
Vivi39g00008 453 FunFam Transcriptional activator Myb isoform A 196 249 - -
Vivi39g00008 453 SUPERFAMILY Homeodomain-like 195 290 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi39g00008 141 398 MYB Transcription Factor Family AT4G18770 54.579 6.35e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi39g00008 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi39g00008 K09422 - gmx:100816653 556.214