Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi397g00013 ATGGATGAATCCGTGAAGCCAGAATCGGAATCTAAAACCGTTTTGCTTGATCAGGAAATGCCCGCGGTGAATGGTTGCATTGTTTACACTCGAGGCAAAAGGTCTCTCAATCCGTGTAATGGTCTTTCCGAGGACGTTGATTGCAAGAGATTCAGGGAAGATGCGGAGACGCCGATTGAGTTGGAGAATGGGGTTGATTGTTGCACGGGGAGTAGAGATGATGGCGAGTGTGGTGATGGGATGAAGAGTGAGGTTCGTGAGGTTGCGGAAACGGCGGTCAAGCGGATTACGAGATCGGCGATGAAAGCGGAAGTTGAGTCCAGTAAGGTGCCGGTAAGGAATTTCAAGCGGATTACACGATCTGCTATGAAAACGAAAGTTGAGTCCAATGAGAAGATGGTGAATGTGTTAGAACAGATTGGTGCTGCAGTTGGTGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGGTCAGCAATGAAAGAAAAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAACGCGACGGTGTGGTGCCGGTGAGAAATTCGAAGCGGCTTACACGTACAGCAATGAAAGAAAAGGCTGAGTTTCGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAAGGCAATGGTGTGGCGCAGGTGAGAAATTCGAAGCGGTTCACACGCTCAGCAGTGAAAGAAAAGGCCGAATCTTGTGAAAAGATGGTTACTGTTGTAGAACAACAAGGTGATGCAGTTGTAAGTGGTAAAAGTGATGGTGCAGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTCAGCATTGAAAGAAAAGGCGGATTCCTGTGAAGAGACGGGGAATGTGGTAGAACCACAAGGTGCTGCAGTTGTGAGTGGTAAAGGTGATGGCGCGGTGCCAGTAAGAAATTTGAAGCGGTTTACACGCTCAACAATGAAAGAAAATGCTGAGTCCTGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGGCGATGGTACGGTGAGGATGTCCAAGCGAATTACACGATCGGCGGGAAAAGTGAAGGCTGAATCCGGTGAGGAGACAGTGACTGAGTTAGAACAGCAGGGTGCTGCCGTTGCAAGTGGTGAAGGTTCAGTGAGGATGTTCAAGCGGATTACACGATCAGCTTCCATGAAAGCAAATCCCGAGTCCGGTGAGGAAACAGTGACCAAGTTAGAAAAAAAAAGGGCCGCCGTTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTGAAGATGTCAAAGAAGATTGTGGTTAATAAGAAGCCTACAACAGTCAAAGAGCTCTTGCATACCGGATTACTTGATGGCATCTCTGTGGTTTACGTTGGCGGCCTTAAGAAGGCACTAGGATTAAAGGGTGTTATAAGTAATGGGGGAATATTGTGCTCGTGCTGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATATGCCTTGAAAATGGGAAGAACCTGCTTGATCTGTTGAGAGCGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTCGCTCTCCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTCTCCCTTCTTCTTGTATGGAAAGAGCGGGACCTATATGCTCTTCTTGTGCAGAATCATGTAAACCTGAAGAAAGCTCGAAGAATGTAGTTGGCAAAAGAGTCAGATCCCCTAGGCCAGTGTTGGTCTCCAAGTCATCCTGTGCTACTGAGCTGTCAATTTCTTCAAAAAGTAAGAGACACGGGAAGAAAAGAACAAAGTCATCAAAAAGGGACAACAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCGGAAGAAAATTACTCTGAAGACGAAAAAGAATGTTATTACCAGGTCACTCTCCGTAAAGTTGAAGACCACTTCAAATTGTTTATCTCCTCAAAAGAGTCAATCGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTTTGTGTAGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCGCTCTCCAAGGACCGAAAATACTCTGCAAAGGACAATGATGATTTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGGTCTGGCTTTGGTCCACGTACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGGGGGATCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAACTGGCTTTGCAGCGATGATTGCAAGAGAATACACTCTACTTTGGAGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAATCTCTCTTGGCTGTTATAGAGAAAAAGCATGGAGAAAAAGGATTGGATCCCATCAATGATATTAATGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATGCTTTAATGGTCTTTTCATTTGTTACTTAA 3072 0.4427 MDESVKPESESKTVLLDQEMPAVNGCIVYTRGKRSLNPCNGLSEDVDCKRFREDAETPIELENGVDCCTGSRDDGECGDGMKSEVREVAETAVKRITRSAMKAEVESSKVPVRNFKRITRSAMKTKVESNEKMVNVLEQIGAAVGAVPVRNLKRFTRSAMKEKTVNVVEQQGAADVSGKRDGVVPVRNSKRLTRTAMKEKAEFREETVNVVEQQGAADVSGKGNGVAQVRNSKRFTRSAVKEKAESCEKMVTVVEQQGDAVVSGKSDGAVPVRNLKRFTRSALKEKADSCEETGNVVEPQGAAVVSGKGDGAVPVRNLKRFTRSTMKENAESCEETVNVVEQQGAAVVSGKGDGTVRMSKRITRSAGKVKAESGEETVTELEQQGAAVASGEGSVRMFKRITRSASMKANPESGEETVTKLEKKRAAVVGNINGVLAAPRNKMELKMSKKIVVNKKPTTVKELLHTGLLDGISVVYVGGLKKALGLKGVISNGGILCSCCLCKGSRVIPPSQFEIHACKQYKRAVEYICLENGKNLLDLLRACRRAPLHDLEATIQNFVRSPPEEKYFTCKRCKGCLPSSCMERAGPICSSCAESCKPEESSKNVVGKRVRSPRPVLVSKSSCATELSISSKSKRHGKKRTKSSKRDNNSSNSSKSASVPILPRKKITLKTKKNVITRSLSVKLKTTSNCLSPQKSQSKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSAKDNDDLCVVCWDGGNLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLGDHKMAFLKELPKGNWLCSDDCKRIHSTLENVLVRGAERLPQSLLAVIEKKHGEKGLDPINDINVSWRLLSGKNASPETRPLLLEAVSIFHALMVFSFVT 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi397g00013 1023 ProSiteProfiles Zinc finger PHD-type profile. 799 844 IPR019787 -
Vivi397g00013 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 886 948 IPR013083 -
Vivi397g00013 1023 Coils Coil 323 343 - -
Vivi397g00013 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 882 IPR013083 -
Vivi397g00013 1023 SMART PHD_3 889 946 IPR001965 -
Vivi397g00013 1023 SMART PHD_3 801 842 IPR001965 -
Vivi397g00013 1023 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 788 865 - -
Vivi397g00013 1023 CDD PHD1_AIRE 801 841 - -
Vivi397g00013 1023 MobiDBLite consensus disorder prediction 627 663 - -
Vivi397g00013 1023 PANTHER AUTOIMMUNE REGULATOR 194 1014 - -
Vivi397g00013 1023 SUPERFAMILY FYVE/PHD zinc finger 880 943 IPR011011 -
Vivi397g00013 1023 Pfam PHD-finger 802 843 IPR019787 -
Vivi397g00013 1023 Pfam Tify domain binding domain 488 543 IPR032308 -
Vivi397g00013 1023 Pfam Tify domain binding domain 739 783 IPR032308 -
Vivi397g00013 1023 Gene3D - 149 434 IPR015943 GO:0005515
Vivi397g00013 1023 ProSitePatterns Zinc finger PHD-type signature. 802 841 IPR019786 -
Vivi397g00013 1023 SUPERFAMILY FYVE/PHD zinc finger 789 847 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi397g00013 449 1014 PHD Transcription Factor Family AT2G36720 51.635 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi397g00013 TDBD 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi397g00013 - - psat:127125742 1691.4