Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi397g00011 ATGGATGAATCCGTGAAGCCAGAATCGGAATCTAAAACCGTTTTGCTTGATCAGGAAATGCCCGCGGTGAATGGTTGCATTGTTTACACTCGAGGCAAAAGGTCTCTCAATCCGTGTAATGGTCTTTCCGAGGACGTTGATTGCAAGAGATTCAGGGAAGATGCGGAGACGCCGATTGAGTTGGAGAATGGGGTTGATTGTTGCACGGGGAGTAGAGATGATGGCGAGTGTGGTGATGGGATGAAGAGTGAGGTTCGTGAGGTTGCGGAAACGGCGGTCAAGCGGATTACGAGATCGGCGATGAAAGCGGAAGTTGAGTCCAGTAAGGTGCCGGTAAGGAATTTCAAGCGGATTACACGATCTGCTATGAAAACGAAAGTTGAGTCCAATGAGAAGATGGTGAATGTGTTAGAACAGATTGGTGCTGCAGTTGGTGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGGTCAGCAATGAAAGAAAAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAACGCGACGGTGTGGTGCCGGTGAGAAATTCGAAGCGGCTTACACGTACAGCAATGAAAGAAAAGGCTGAGTTTCGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAAGGCAATGGTGTGGCGCAGGTGAGAAATTCGAAGCGGTTCACACGCTCAGCAGTGAAAGAAAAGGCCGAATCTTGTGAAAAGATGGTTACTGTTGTAGAACAACAAGGTGATGCAGTTGTAAGTGGTAAAAGTGATGGTGCAGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTCAGCATTGAAAGAAAAGGCGGATTCCTGTGAAGAGACGGGGAATGTGGTAGAACCACAAGGTGCTGCAGTTGTGAGTGGTAAAGGTGATGGCGCGGTGCCAGTAAGAAATTTGAAGCGGTTTACACGCTCAACAATGAAAGAAAATGCTGAGTCCTGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGGCGATGGTACGGTGAGGATGTCCAAGCGAATTACACGATCGGCGGGAAAAGTGAAGGCTGAATCCGGTGAGGAGACAGTGACTGAGTTAGAACAGCAGGGTGCTGCCGTTGCAAGTGGTGAAGGTTCAGTGAGGATGTTCAAGCGGATTACACGATCAGCTTCCATGAAAGCAAATCCCGAGTCCGGTGAGGAAACAGTGACCAAGTTAGAAAAAAAAAGGGCCGCCGTTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTGAAGATGTCAAAGAAGATTGTGGTTAATAAGAAGCCTACAACAGTCAAAGAGCTCTTGCATACCGGATTACTTGATGGCATCTCTGTGGTTTACGTTGGCGGCCTTAAGAAGGCACTAGGATTAAAGGGTGTTATAAGTAATGGGGGAATATTGTGCTCGTGCTGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATATGCCTTGAAAATGGGAAGAACCTGCTTGATCTGTTGAGAGCGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTCGCTCTCCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTCTCCCTTCTTCTTGTATGGAAAGAGCGGGACCTATATGCTCTTCTTGTGCAGAATCATGTAAACCTGAAGAAAGCTCGAAGAATGTAGTTGGCAAAAGAGTCAGGTCATCAAAAAGGGACAACAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCGGAAGAAAATTACTCTGAAGACGAAAAAGAATGTTATTACCAGGTCACTCTCCGTAAAGTTGAAGACCACTTCAAATTGTTTATCTCCTCAAAAGAGTCAATCGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTTTGTGTAGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCGCTCTCCAAGGACCGAAAATACTCTGCAAAGGACAATGATGATTTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGGTCTGGCTTTGGTCCACGTACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGGGGGATCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAACTGGCTTTGCAGCGATGATTGCAAGAGAATACACTCTACTTTGGAGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAATCTCTCTTGGCTGTTATAGAGAAAAAGCATGGAGAAAAAGGATTGGATCCCATCAATGATATTAATGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATCAATGCTTTGATCCTATAGTTGATGAAGCCAGCGGCCGCGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAATTTAGAGGAATGCATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCCGGCATGCTTCGAATCTTCGGCACTGATATTGCCGAACTTCCTTTAGTTGCAACAAGTAACAGTCATCATGGGAAGGGCTACTTCCAAGCACTCTTCTCCTGCATCGAACGGCTACTGGCTTTTATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACTGTCCATATGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACGAGCTTGCCAGCTACAGAAGGAACTGCAACCAATTTGTGAACTTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCAACCCCCACAAATTTTTATCGAGAAAAAGTCAATCATGGAAGCGGAAACCTCGTAG 3459 0.4429 MDESVKPESESKTVLLDQEMPAVNGCIVYTRGKRSLNPCNGLSEDVDCKRFREDAETPIELENGVDCCTGSRDDGECGDGMKSEVREVAETAVKRITRSAMKAEVESSKVPVRNFKRITRSAMKTKVESNEKMVNVLEQIGAAVGAVPVRNLKRFTRSAMKEKTVNVVEQQGAADVSGKRDGVVPVRNSKRLTRTAMKEKAEFREETVNVVEQQGAADVSGKGNGVAQVRNSKRFTRSAVKEKAESCEKMVTVVEQQGDAVVSGKSDGAVPVRNLKRFTRSALKEKADSCEETGNVVEPQGAAVVSGKGDGAVPVRNLKRFTRSTMKENAESCEETVNVVEQQGAAVVSGKGDGTVRMSKRITRSAGKVKAESGEETVTELEQQGAAVASGEGSVRMFKRITRSASMKANPESGEETVTKLEKKRAAVVGNINGVLAAPRNKMELKMSKKIVVNKKPTTVKELLHTGLLDGISVVYVGGLKKALGLKGVISNGGILCSCCLCKGSRVIPPSQFEIHACKQYKRAVEYICLENGKNLLDLLRACRRAPLHDLEATIQNFVRSPPEEKYFTCKRCKGCLPSSCMERAGPICSSCAESCKPEESSKNVVGKRVRSSKRDNNSSNSSKSASVPILPRKKITLKTKKNVITRSLSVKLKTTSNCLSPQKSQSKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSAKDNDDLCVVCWDGGNLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLGDHKMAFLKELPKGNWLCSDDCKRIHSTLENVLVRGAERLPQSLLAVIEKKHGEKGLDPINDINVSWRLLSGKNASPETRPLLLEAVSIFHQCFDPIVDEASGRDLIRAMVYGKSVRGQEFRGMHCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQALFSCIERLLAFMKVKNLVLPAAEEALSIWTDKFGFSKIKPDELASYRRNCNQFVNFKGTNMLHKMVPPCRIINNQPPQIFIEKKSIMEAETS 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi397g00011 1152 Coils Coil 323 343 - -
Vivi397g00011 1152 PANTHER AUTOIMMUNE REGULATOR 194 1125 - -
Vivi397g00011 1152 SMART PHD_3 770 811 IPR001965 -
Vivi397g00011 1152 SMART PHD_3 858 915 IPR001965 -
Vivi397g00011 1152 Pfam Tify domain binding domain 488 543 IPR032308 -
Vivi397g00011 1152 Pfam Tify domain binding domain 708 752 IPR032308 -
Vivi397g00011 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 855 917 IPR013083 -
Vivi397g00011 1152 Gene3D - 957 1126 - -
Vivi397g00011 1152 SUPERFAMILY FYVE/PHD zinc finger 758 816 IPR011011 -
Vivi397g00011 1152 ProSitePatterns Zinc finger PHD-type signature. 771 810 IPR019786 -
Vivi397g00011 1152 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 757 834 - -
Vivi397g00011 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 845 IPR013083 -
Vivi397g00011 1152 CDD PHD1_AIRE 770 810 - -
Vivi397g00011 1152 Pfam PHD-finger 771 812 IPR019787 -
Vivi397g00011 1152 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1014 1100 IPR016181 -
Vivi397g00011 1152 Gene3D - 149 434 IPR015943 GO:0005515
Vivi397g00011 1152 MobiDBLite consensus disorder prediction 606 628 - -
Vivi397g00011 1152 SUPERFAMILY FYVE/PHD zinc finger 849 912 IPR011011 -
Vivi397g00011 1152 ProSiteProfiles Zinc finger PHD-type profile. 768 813 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi397g00011 449 1133 PHD Transcription Factor Family AT2G36720 52.198 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi397g00011 TDBD 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi397g00011 - - psat:127125742 1940.24