Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi397g00010 ATGAGATTCAACAAAATCCACTTTTGGCTATCAAGCTTTGTCATGTTTCTCATTTCTATTATCATTGTTCATTACAGCACGCCACTTACCAACACCTATAACACTACTATTAATAGTTCTCAAGGTAGTTTCGGTGTTCAACTTGGCATATTAAACAAGCTTATAAAATTAAATGGTGTTCAAGATTTCGTGTATTTGGTGGTATCAAGTATTGCACAGCATCATCATAGGGAGAAGCATAAGGAAAAACGCGACCGGGTCGAATGGACTTCTAAATCATTTTTAAATTGTAATGCGACCATTGTTTTCACGGTTGATTTAAAGGGTCATGCTAACTTTAGTAGCATTCAAAAAGCAGTTGATGCTGTTCCTGAATCTAGCTCTAATACCACTCTCATCATAATCAATTCTGGTACATACAGAGAGAAGATAGCGGTTCAAGCCAACAAAACAAATCTAATACTACAAGGTCAAGGATATCTTAATACAATCATAGAATGGAATGACACTTCAAATTCCACTGGTGGGACTTCCTTTAGTTACTCATTTGCAGTCTTTGCTTCTAAGTTCTCTGCTTACAACATTAGCTTTAAGAACACTTCTCCTCCACCTTCACCAGGAGAGGTTGGAGCACAGGCAGTAGCGCTGAGAGTTACCGGTGATCAAGCGGCATTCTATGGCTGCGGTTTTTATGGCGCGCAGGACACACTCAATGATGACATGGGAAGACATTATTTTAAGGAATGTTTCATTCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTACGAGGATTGCACCATAAACTCAATAGCAAAACAAGATTTAGGTGGTGTTGACGGGTCTATCACGGCGCAAGGAAGACAATCATTAGAGGAACAAACAGGATTTTCGTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGACCATTTGCCACAGTTGTTTTTTCAACAACAAACATGTCTGATGTGGTAGCTCCTGAGGGATGGAACGATTGGAATGATCCATCTAGAGACCAGACTGTTTTCTTTGGAGAGTACCATTGTACTGGAGTTGGAGCAAATGATACATCTAGAGTCTCTTATGCAAGACAACTCAGAGATTGTGAAGCAATTTCATATATTAATGTTTCATATATTGATGGAAATGATTGGCTTCTTAACTATTTAACTTGA 1209 0.3863 MRFNKIHFWLSSFVMFLISIIIVHYSTPLTNTYNTTINSSQGSFGVQLGILNKLIKLNGVQDFVYLVVSSIAQHHHREKHKEKRDRVEWTSKSFLNCNATIVFTVDLKGHANFSSIQKAVDAVPESSSNTTLIIINSGTYREKIAVQANKTNLILQGQGYLNTIIEWNDTSNSTGGTSFSYSFAVFASKFSAYNISFKNTSPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDMGRHYFKECFIQGSIDFIFGNARSLYEDCTINSIAKQDLGGVDGSITAQGRQSLEEQTGFSFVNCNIVGSGKVWLGRAWGPFATVVFSTTNMSDVVAPEGWNDWNDPSRDQTVFFGEYHCTGVGANDTSRVSYARQLRDCEAISYINVSYIDGNDWLLNYLT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi397g00010 402 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Vivi397g00010 402 Gene3D - 97 401 IPR012334 -
Vivi397g00010 402 Pfam Pectinesterase 105 394 IPR000070 GO:0030599|GO:0042545
Vivi397g00010 402 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 91 397 - -
Vivi397g00010 402 FunFam Pectinesterase 97 402 - -
Vivi397g00010 402 SUPERFAMILY Pectin lyase-like 101 397 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi397g00010 95 397 Carbohydrate Esterase AT1G05310 55.556 3.28e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi397g00010 - - gmx:100802034 601.282