Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi397g00006 ATGAGCCACCTTCCTTTCTTCATCATCTTCTTTGTTCTAACTATAAACACTATATCACTAACAATCACTAACTCCTGTGACGACTCACTGTGGAGCTCTAGTCTCATAAATGATTACAATGTAACCCTTGTACTCAGGGTTGATAAAAACAATTGTGGCAACTTTTCAACTATCCAAGAGGCCGTAAACAATGTGCCTGATTCAAGTTTACAATTTACTCTTGTCATTATTGATTCGGGCATCTACAGGGAGAAGGTAGTAGTTAATGAGAAAAAGACAAAGTTGATTATTCAAGGTCAAGGCTATCTTAATACAATTATAGAATGGGGTGATTTTGGAAACCTGACTGGAACCTTCAACAGTTACTCTTTTGCTGTCTTTGCCACAGAATTCAGAGCCTACAATATCAGTTTTAAGAATACTTTTCCTCGACCTCCGTCACAAGGAGCTATCGGAGCACAGGCAGTTGCACTGAGAGCTAGTGGAGACAAAGCAGCATTTTACGGTTGTGGATTTTATGGTGCTCAAGACACCCTTCATGATGACCTAGGAAGACATTACTACAAAGGATGTTTTATTCAAGGATCCATCGATTTTATATTCGGAAATGCAAGGTCACTTTATGAGGATTGTTATTTAAACTCTATAGCAAAAACCGAGTGGGTTGGAGATGGAGGATATATAACAGCCCAGGGACAGGAGTCATTGAAAGACAACTCTGGATTTTCTTTTGTCAACTGCAACATCAATGGTACTGGGAAAATACTGCTTGGAAGACCTTGGAAACCATATGCCAAAGTTATTTTCTCTACCACCTATATGTCTGATGTTGTAAGTGATATTGGATGGAGTGACAAACTTAAGGGAGCGTCAGTAAACCAGACCATTTATTTTGGAGAGCATAACTGCAAGGGACCTGGAGCAAAAACAGCATCCCCTCCAAGAGCCTTTTTTGGAAAGCAGCTCAAGGATGATGAAGCTGCTCCTTACATCAATATTTCATATATTAATGGAAGTGAATGGCTTCATTAG 1032 0.3944 MSHLPFFIIFFVLTINTISLTITNSCDDSLWSSSLINDYNVTLVLRVDKNNCGNFSTIQEAVNNVPDSSLQFTLVIIDSGIYREKVVVNEKKTKLIIQGQGYLNTIIEWGDFGNLTGTFNSYSFAVFATEFRAYNISFKNTFPRPPSQGAIGAQAVALRASGDKAAFYGCGFYGAQDTLHDDLGRHYYKGCFIQGSIDFIFGNARSLYEDCYLNSIAKTEWVGDGGYITAQGQESLKDNSGFSFVNCNINGTGKILLGRPWKPYAKVIFSTTYMSDVVSDIGWSDKLKGASVNQTIYFGEHNCKGPGAKTASPPRAFFGKQLKDDEAAPYINISYINGSEWLH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi397g00006 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 342 - -
Vivi397g00006 343 Pfam Pectinesterase 47 338 IPR000070 GO:0030599|GO:0042545
Vivi397g00006 343 Gene3D - 39 343 IPR012334 -
Vivi397g00006 343 ProSitePatterns Pectinesterase signature 2. 193 202 IPR033131 -
Vivi397g00006 343 SUPERFAMILY Pectin lyase-like 43 342 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi397g00006 38 343 Carbohydrate Esterase AT1G05310 49.032 1.93e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi397g00006 - - vvo:131614791 627.476