Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi394g00019 ATGGAACCTGCCCAATTGATTTCTCAAGAGTGGGATTCTCTTAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGTCTCAATTCCTTGGTGGTAACTATTCTTTCACCGAGAAACACTGTGGGGATGGAAATACTAATTTTGGCACACCATCTTATTTTTCTTCAAATGTTGCAAACTCTAATTCTATGTGTTTCTCCGATGGGAGTAGCACAAACACTGCTAATAGTGCTGATGGCATCTACTACTCGGATCCGGCAACAAACATTGATTCGTTGTCCATGCTTTTTTGCTCGGGAGAAGATGCTAAATTTAGTCCACAATATTTCAATGATAGTTTTAGCCATCAGATAAATTATGAAAACATTGATCATGAGAGGTTATGTTTAGAGCCATATGAAATGATGATGGTTTCGGAACCTTCTTCAGAAGAAAATAGAAGCCAAAACATGGAGAACCCTGCAAAAAGATTTAGGACCTCAAATGCTTCCATGGAGCTAAATGAGGGAACATCTCCAATTCTAAGTCCAAAAGAACCTCAAGTGCCGAATTTATGTAGAAAATCAAAAGCACGAAATGGTCCTGCCACTGATTCTCAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAGTCTTGCAGACCCTTGTCCCAAATGGAACTAAGGTGGACATTAGTACCATGCTTGAAGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATCAACATTGGATTAGACCTCACTTTTTCATAG 831 0.3875 MEPAQLISQEWDSLSGQYTAEEADFMSQFLGGNYSFTEKHCGDGNTNFGTPSYFSSNVANSNSMCFSDGSSTNTANSADGIYYSDPATNIDSLSMLFCSGEDAKFSPQYFNDSFSHQINYENIDHERLCLEPYEMMMVSEPSSEENRSQNMENPAKRFRTSNASMELNEGTSPILSPKEPQVPNLCRKSKARNGPATDSQSIYARRRRERINERLRVLQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPIAYNGINIGLDLTFS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi394g00019 276 Gene3D - 197 262 IPR036638 GO:0046983
Vivi394g00019 276 Pfam Helix-loop-helix DNA-binding domain 205 245 IPR011598 GO:0046983
Vivi394g00019 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 262 IPR036638 GO:0046983
Vivi394g00019 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Vivi394g00019 276 FunFam Basic helix-loop-helix transcription factor 196 253 - -
Vivi394g00019 276 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 267 - -
Vivi394g00019 276 SMART finulus 201 250 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi394g00019 184 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 78.409 7.15e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi394g00019 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi394g00019 - - tpra:123881860 340.117