Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi394g00018 ATGGAACCTACCCAATTGATTTCTCAAGAGTGGGATTCTCTAAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGACTCACTTCCTTGGTGGTAACTATTCATGTTTTCCTTCTAATGTTGCAAATGCTAATGCTAATTTTATGTATTTCTCTCAAGGGATTAGCTCAAAGACTGATTATAGTGATGACATATTTCCTACCATTACAGCAAGTAATGGACCATACCTATGTAATCCGGCAACAGACATTGATTCACTATCCATGTTTTTTAGTCCACAATATTTGGATGATAACTTAATCAAACAGATAAACTATGAAGGCATTGATCATGAAAGGTTATGTTTAGAGTCAGCTTCACAAGCGGATCGAACTATAAACATGGAGAACCCTGCTAAAAGATTTAGGAGCTCAATAGAGGTTTCAGAAAACACGAGAAATGGCTCCAACTACTGTTTTTCACATAACTCAAATGCTTTTTTGGTGCTAAATGGAGGAACATCTCCAAGTCTAAACCCAAAAGAAAACGAAGTGACGAATTTAGGTAGAAAATCAAGAGCAAGAAATGGTCATGCTACTGATTCTCAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAGACCCTTGTCCCAAATGGAACTAAGGTGGACATTAGTACCATGCTTGAAGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGAGGATATGTGGATGTATGCTCCATTAGCTTACAATGGAATCAACATTGGATTAGACCTCACTTTTTCTTCTCCAACAAATTAA 831 0.3694 MEPTQLISQEWDSLSGQYTAEEADFMTHFLGGNYSCFPSNVANANANFMYFSQGISSKTDYSDDIFPTITASNGPYLCNPATDIDSLSMFFSPQYLDDNLIKQINYEGIDHERLCLESASQADRTINMENPAKRFRSSIEVSENTRNGSNYCFSHNSNAFLVLNGGTSPSLNPKENEVTNLGRKSRARNGHATDSQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPLAYNGINIGLDLTFSSPTN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi394g00018 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 257 IPR036638 GO:0046983
Vivi394g00018 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Vivi394g00018 276 FunFam Basic helix-loop-helix transcription factor 192 249 - -
Vivi394g00018 276 Gene3D - 190 258 IPR036638 GO:0046983
Vivi394g00018 276 Pfam Helix-loop-helix DNA-binding domain 201 241 IPR011598 GO:0046983
Vivi394g00018 276 SMART finulus 197 246 IPR011598 GO:0046983
Vivi394g00018 276 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 263 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi394g00018 149 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 64.167 1.24e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi394g00018 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi394g00018 - - psat:127092927 378.637