Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi394g00016 ATGGATCCTTGTGAGCAAAGTTGTGAAGAATGGAGTTCCCTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTGATAACTGTCAAGTCCCTCAGCATGATTATCCAAATTTCAATTTTGAAGTTCCATCTACATTATGGCCTGGACATGACTCCACAATAGTGAGCATGAATAACAGTGACCATTTTCCTCAAAATGTTGATAATAGTAACATCAATTTTTTGAGTTTTTTACATGGAAGTGACACAATTTCTGATGCAAATGGTAGTTACAACTGTTTGAATGACGATCAAGTAGCAAACATTGGATACATATCCATGCTGAATGGTGATTTCGGCGCTTATAGTGTTCAAAGGAATGATAGTGCACAGATAACCGAAAACAATACGGATGAAGAGTTTTGTCAAGAGGTTATTGGTGACAAGAGTTTTCAGGATCACGTGGAATGTGAAGAGTTACTGGTTTCTGAATCAGTGGAAGATGGTGTTAAAATCAACATGGAGAAGTCAGGAAAAAGATCTAGGTGCTCAATGAAGGTACAAAAGAATAAGAAAAATATCAAACCTAGAAAGAAATCGAAATCTATAAGCAACACTGAAGAGGATGAAAGTCCTGATCTTCAGGAGCAGAATTTGAGCTCAGAGGAGGATGACTCCAGTGCTTCTAAGAAGCTAAATGAAGAAGGGTCTTCGATCTTGAACCAGAAGGATTCAACATCTATGAAGTTAAAAGGAAAATCAAGATGTGATAGAGGTTCTTCCGCTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATTCTACAAAGCCTAGTCCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTCTTGCAGGTCCAAATTAAGCTTCTTAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTAAACCTCAACATTACACCTACCAAATTTCCATAG 1035 0.3807 MDPCEQSCEEWSSLSGFYTAEEADFMGQLLDNCQVPQHDYPNFNFEVPSTLWPGHDSTIVSMNNSDHFPQNVDNSNINFLSFLHGSDTISDANGSYNCLNDDQVANIGYISMLNGDFGAYSVQRNDSAQITENNTDEEFCQEVIGDKSFQDHVECEELLVSESVEDGVKINMEKSGKRSRCSMKVQKNKKNIKPRKKSKSISNTEEDESPDLQEQNLSSEEDDSSASKKLNEEGSSILNQKDSTSMKLKGKSRCDRGSSADPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNITPTKFP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi394g00016 344 Gene3D - 266 319 IPR036638 GO:0046983
Vivi394g00016 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 324 IPR036638 GO:0046983
Vivi394g00016 344 MobiDBLite consensus disorder prediction 230 245 - -
Vivi394g00016 344 FunFam Basic helix-loop-helix transcription factor 259 316 - -
Vivi394g00016 344 CDD bHLH_AtIND_like 259 321 - -
Vivi394g00016 344 SMART finulus 264 313 IPR011598 GO:0046983
Vivi394g00016 344 MobiDBLite consensus disorder prediction 181 197 - -
Vivi394g00016 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Vivi394g00016 344 MobiDBLite consensus disorder prediction 173 268 - -
Vivi394g00016 344 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 123 316 IPR045843 GO:0003700|GO:0006355
Vivi394g00016 344 Pfam Helix-loop-helix DNA-binding domain 268 308 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi394g00016 10 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 36.785 1.78e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi394g00016 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi394g00016 - - tpra:123881885 461.84