Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi392g00012 ATGGCTCTTAGTGCATTTTTTCATATACTCATCCTTGTAGGTTCACTCTCAATATTCATAGTGACTCCTTCCTATAGTTTTAATCCAAGGAAGCTTGTCAATGTAACTTCATACTACTCACCTGATTCAGATTGGTCACCTTCAGTGGCTACTTGGTATGGATCTCCCGACGGTGACGGAAGCGAAGGTGGTGCTTGTGGATATGAAAATGCTGTCGGACAATCTCCATTTTCGTCACTGATATCGGCCGGAAGCCCTGCCATCTACGACTCCGGCAAAGGCTGCGGTTCTTGTTATGAGGTGAGGTGCACAGGAAATTCTGCATGTTCAGGAAACCCTGTGAGAGTAGTTATCACTGATGAGTGTGCTGGTTGTGGCTCAGATGCTGAATATCATTTTGATTTGAGTGGCACTTCTTTTGGCTCCATGGCTATTTCAGGCCAAGATCAAGAGCTACGTAATGCAGGAAAAATAAACATGGAACATAGAAGAGTTGAATGCAACTATGCAGGTAGATCAATAGCTTTCCACGTGGACTCTGGATCAAACCATGAATATTTTGCGACATTAATTGAATATGAGGAAGGAGATGGTGATCTTAACAAAGTTGAAGTGAAGGAAGCACTTGATTCATCTTCTTGGGATGCCATGCAACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGGGCACCACTTCATGCACCATTTTCAATTAGGTTGACTACACTTGCTTCTGGAAAGACTATTGTGGCAGAGAATGTGATTCCTGCTGGTTGGAAGCCTGGTCAGACTTATAGATCAATTGTGAATTTTTAA 819 0.4261 MALSAFFHILILVGSLSIFIVTPSYSFNPRKLVNVTSYYSPDSDWSPSVATWYGSPDGDGSEGGACGYENAVGQSPFSSLISAGSPAIYDSGKGCGSCYEVRCTGNSACSGNPVRVVITDECAGCGSDAEYHFDLSGTSFGSMAISGQDQELRNAGKINMEHRRVECNYAGRSIAFHVDSGSNHEYFATLIEYEEGDGDLNKVEVKEALDSSSWDAMQQSWGAVWKFDKGAPLHAPFSIRLTTLASGKTIVAENVIPAGWKPGQTYRSIVNF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi392g00012 272 CDD DPBB_EXPB_N 45 167 - -
Vivi392g00012 272 PANTHER EXPANSIN-B3 16 272 - -
Vivi392g00012 272 Pfam Lytic transglycolase 82 160 IPR009009 -
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Vivi392g00012 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Vivi392g00012 272 Gene3D - 31 168 IPR036908 -
Vivi392g00012 272 SUPERFAMILY PHL pollen allergen 172 268 IPR036749 -
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Vivi392g00012 272 Pfam Expansin C-terminal domain 174 257 IPR007117 -
Vivi392g00012 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 172 IPR007112 -
Vivi392g00012 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Vivi392g00012 272 SUPERFAMILY Barwin-like endoglucanases 34 171 IPR036908 -
Vivi392g00012 272 Gene3D - 169 272 IPR036749 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi392g00012 24 272 Expansin Gene Family AT1G65680 57.831 8.37e-112 322