Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi392g00008 ATGGACAAATACAAGTGCAAACTTTGCAATAGAAGCTTCAACAATGGAAGAGCATTGGGAGGTCACATGAGATCTCACATGATGAATCTTCTTGTTACAAAACAAGAAGATTCGTCAAGAATGATTCAACTTAGTTTTGAAGGTGAATCAACTTCATCTTCTTCATCGTCATCCGAAGATGATGACGATGAAAAAGGTCTTAGTTATGGTCTTAGAGAGAATCCTAAGAGAAGCATTCGTCTTGTAGATCAAGAGTTCTCTTTTCCACCGGTGGATACAAGTTCGGTGATTCTTCAAGATGTAGAAAGTGAAAGTGAATCGTCGAAGAACAATCCGACTCGCAAAAGATCTAAAAGGGTATGGAAAATCCGTCACTTTGATCAAAAGTATTATAATGAATCTAGTATGAAGAAAGTGAAGTTTTTAAATAAAAATGACTCTTCTTCCGTTGTTGATCATGAACCGGGTAGTTCGGTTTCTGATACAACAGAAGAAGATGTTGCGTTTTGTCTAATGAAATTGTCAAGAGACAAATGGGATAGACAAAATGAGCAATACGAGGAGTACGCAGAAGAAGAAGAAGAAGAAATAGATGATGATGACGAGGATCCTGAGATCGAAGAAGATGAAGAAGAGGAAGAAATTGATAGATCTTTAGAAGAGAGTGATGAATCTCAAGAGCTAATAAAAGTGAACAAGAGTAACAACAAAGTACGCAAAGGAAAATACAAATGTGAAACATGTAACAAAGTGTTTAAATCATATCAAGCATTAGGCGGACACCGCGCGAGTCACAAGAAGATTAAAACAAACATAACAATAGAAGAATCATCGCCCGAATTTGATGTTGTCGAGAAGAAAGTTCATGAATGTCCGGTTTGTCTTCGAGTTTTTAATTCGGGACAAGCACTTGGTGGACACAAAAGAACACATGTGATGCATGGATCAACAACATCAACAACAATTCCAATTTTTAGTACAAAAAAAGTTGGAAAAAGTGTTATAGATCTTAACCTCCCTGCACCAATTGATGAAGATGAGGTTAGTCAAATTGAGAATTCTGCTGTTTCAGATGCTGAATTTGTCAAAACTCATTAG 1098 0.3652 MDKYKCKLCNRSFNNGRALGGHMRSHMMNLLVTKQEDSSRMIQLSFEGESTSSSSSSSEDDDDEKGLSYGLRENPKRSIRLVDQEFSFPPVDTSSVILQDVESESESSKNNPTRKRSKRVWKIRHFDQKYYNESSMKKVKFLNKNDSSSVVDHEPGSSVSDTTEEDVAFCLMKLSRDKWDRQNEQYEEYAEEEEEEIDDDDEDPEIEEDEEEEEIDRSLEESDESQELIKVNKSNNKVRKGKYKCETCNKVFKSYQALGGHRASHKKIKTNITIEESSPEFDVVEKKVHECPVCLRVFNSGQALGGHKRTHVMHGSTTSTTIPIFSTKKVGKSVIDLNLPAPIDEDEVSQIENSAVSDAEFVKTH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi392g00008 365 Gene3D Classic Zinc Finger 2 65 - -
Vivi392g00008 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Vivi392g00008 365 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 364 IPR044303 GO:0006355
Vivi392g00008 365 SMART c2h2final6 243 265 IPR013087 -
Vivi392g00008 365 SMART c2h2final6 4 26 IPR013087 -
Vivi392g00008 365 SMART c2h2final6 289 311 IPR013087 -
Vivi392g00008 365 MobiDBLite consensus disorder prediction 46 72 - -
Vivi392g00008 365 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Vivi392g00008 365 ProSitePatterns Zinc finger C2H2 type domain signature. 291 311 IPR013087 -
Vivi392g00008 365 MobiDBLite consensus disorder prediction 185 233 - -
Vivi392g00008 365 MobiDBLite consensus disorder prediction 58 72 - -
Vivi392g00008 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
Vivi392g00008 365 MobiDBLite consensus disorder prediction 186 221 - -
Vivi392g00008 365 Coils Coil 208 228 - -
Vivi392g00008 365 Gene3D Classic Zinc Finger 240 311 - -
Vivi392g00008 365 Coils Coil 176 203 - -
Vivi392g00008 365 SUPERFAMILY beta-beta-alpha zinc fingers 285 313 IPR036236 -
Vivi392g00008 365 Pfam C2H2-type zinc finger 243 267 - -
Vivi392g00008 365 Pfam C2H2-type zinc finger 288 311 - -
Vivi392g00008 365 Pfam C2H2-type zinc finger 4 27 - -
Vivi392g00008 365 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vivi392g00008 365 SUPERFAMILY beta-beta-alpha zinc fingers 3 265 IPR036236 -
Vivi392g00008 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 316 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi392g00008 1 351 C2H2 Transcription Factor Family AT3G60580 44.290 1.21e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi392g00008 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi392g00008 - - tpra:123890030 547.354