Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi392g00006 ATGGATTTTACTTTGGGACATGCATTTTCATATATACTCATCTATGTAGGTGCACTCTCAATATTACTACATACCCCTTCGTCTTGTTTTCAACCCAAAAAGCTTGTTATTGTTACTTCAAACTTCTCATCTGATTCAGATTCGTCATCTTCAATGGCTACTTGGTATGGACCTCCTGACGGTGATGGAAGTGAAGGCGGTGCTTGTGGATATGGAAAAGCTGTTGGCCTGCCTCCATTCAACTCAATGATATCAGCCGGAAGCCAATTCATCTTCCAAGAAGGCAAAGGATGTGGCTCTTGTTATGAGATTATGTGCACAGGAAATTCTGCATGCTCAGAAAACCCTGTGACAGTAGTTATCACGGATAAGTGTCCTGAGTGTAGTCATTATTTTGATTTGAGTGGCAAAGCTTTTAGTTCCATGGCAATTTCAGGTCAAGCTGACAAGCTACTAACAGCCGGGAAAGTAGCAGTTCAATATCAAAGAGTTGCATGCAACTATCCTGGGGTATCAATAACTTTTCGTGTGGACCCGGGATCTAACCAACAATATTTTGCTATTGTAATTGAATATGAAGATGGGGATGGTGATCTCAAAACAGTTGAGCTCAAAGAAGGACTTAGCCCAGCAACTTGGGAAGCCATGCAATGCTCATGGGGCGCTGTTTGGAAAATTGATAAAGGGGCACCACTTCAAGCACCATTTTCTATTAGGCTAACAACAATTGAATCTGGCAAAATATTTGTGGCAAATAATGTGATCCCAGTTGGTTGGAAGCCTGGTCAGACTTTTAGAGCAGTTGGAAATTTTGATTAA 819 0.4127 MDFTLGHAFSYILIYVGALSILLHTPSSCFQPKKLVIVTSNFSSDSDSSSSMATWYGPPDGDGSEGGACGYGKAVGLPPFNSMISAGSQFIFQEGKGCGSCYEIMCTGNSACSENPVTVVITDKCPECSHYFDLSGKAFSSMAISGQADKLLTAGKVAVQYQRVACNYPGVSITFRVDPGSNQQYFAIVIEYEDGDGDLKTVELKEGLSPATWEAMQCSWGAVWKIDKGAPLQAPFSIRLTTIESGKIFVANNVIPVGWKPGQTFRAVGNFD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi392g00006 272 Pfam Lytic transglycolase 85 161 IPR009009 -
Vivi392g00006 272 Pfam Expansin C-terminal domain 173 256 IPR007117 -
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Vivi392g00006 272 SUPERFAMILY Barwin-like endoglucanases 36 170 IPR036908 -
Vivi392g00006 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 267 IPR007117 -
Vivi392g00006 272 SUPERFAMILY PHL pollen allergen 172 266 IPR036749 -
Vivi392g00006 272 PANTHER EXPANSIN-B3 34 267 - -
Vivi392g00006 272 SMART dpbb_1 84 161 IPR007112 -
Vivi392g00006 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Vivi392g00006 272 Gene3D - 167 267 IPR036749 -
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vivi392g00006 272 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi392g00006 272 CDD DPBB_EXPB_N 53 166 - -
Vivi392g00006 272 Gene3D - 33 166 IPR036908 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi392g00006 27 271 Expansin Gene Family AT1G65680 53.226 1.75e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi392g00006 - - gmx:548090 364.385