Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi390g00023 ATGGCTTCAGTTACTCTTTCTCCAAATGCTTCTCCTGTTGTTGCTTTGCCTCCATCATCTAGTGTTGTTGTTTTGTCACCACCGCCACCATCGCCTCAGTCGAATCAAACATCGAATTCTCCTCCTCCTTTATCTCCTTCGGAGCCTACGGCTCTTCCTCCTTCTGATCCTTCAGTTCCTCCTCCTTCGCCTTCAGAGACAGTGCCTGATACTCCTCCTCCTTCGCCACCCGTATCTCCTCCTCCGTCTCCAACTCCACCCCTTTCTCCTCCACCATCAACTACACCGCCGCCAAGTTCTCCACCACCATCGCCACCACCACCAGTTGTAACATCACCACCTCCTGCACCAATTGTAACATCACCACCTCCTGCACCAGTTGTAACATCACCACCTCCTGCACCAGCTACCGCTGCCCCTCCTCCCGATGAAACTTCACCTCCGCCTCCAAATTTGTCTCCACCACCTCCAGCGTCTGGTTCCCCTCCCCCTAAATCATCAAAGCCATCTCCACCACCTCCTTCTCCAGGTAATGTATCAAAGCCACCATCTGCCAATCCTCCTCCTGCACCACACGCAAAGCCACCAAAAAGTACGCCTTCACCTCCTTCACCTGATGCGTCCCCTCCATCAGTTTCTCAACCACCTCCTTTACATGATGCATCCTCTCCATCAGTTTCTCAACCACCTCCTTCACATGATGCATCGCCTCCATCTGTTTCTCAATCACCTCCTTCCCCTTCAACTGTTCCACCTCCATCCACACCATCAACTCTTACTTCAGGACCTGCAGCAACTCCTACTAACGAAACAGTACATGGTGGCAGTCCAAATGTGCCATTGCCATCTAGACCAAGTGTTGACGGTTCTGGTAATATAGCCACAAACAACACTCCTTCACATTCAGGAGGGTTAAATACCGGAGCTGCTGTTACTATTGGCGTTGTAGTTAGTTTAATTGTCCTCAGCCTTCTTGGTATCGCTGTGTTCTTTGTACAGAAAAAGAAAAAGGGGAAAGGATCCAGATCTGATTATGCTGCGCCTTCTCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCATACACTCCAGCCAATTTGAATGGGAGTGGCAATGGTAGTGAATATGTGTATTCACCACCGGAGCCAAGTGGAGTAAATAATTCAAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTTTTCAGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGCGGTGGACAAGGGGAACGTGAGTTTAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCACCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTCGTCTACGACTATGTTCCCAACGATACTCTTCATTATCATCTACATGATGAAAAAGCACCCGTTTTGAATTGGCCTATCAGAGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTGGTTTCAGATTTTGGGCTTGCGAAATTAGCACTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACATTTGGATATATGGCACCAGAATATGCGACGAGTGGAAAATTGACTGATAAGTCTGATGTATATTCCTTTGGTGTCGTGCTTTTAGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAGCCACTTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGATTGAAGCACTCGATACAGAGGACTTTGAAACTTTGGTGGATCCAAGACTAGATAAGAACTACAACAGAAACGAAATGTTTAGAATGATTGAGGCTGCCGCAGCCTGCGTGCGTCACTCCTCAGTCAAGAGGCCACGGATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCCGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAACAATCTGCACAGATCAAAATGTTTAGGAGAATGGCTTTTGGAAGCCAAGATAGTTCCACTTTCTTTAATGATTCTCAAAGTAGCTATGGAAGTAGGAATCAAGACTCTACAACTATGCTCCCGCAAAATAAATCCCGGCCTTGGAACGTTCGAGACGACCCTTTATAG 2283 0.4634 MASVTLSPNASPVVALPPSSSVVVLSPPPPSPQSNQTSNSPPPLSPSEPTALPPSDPSVPPPSPSETVPDTPPPSPPVSPPPSPTPPLSPPPSTTPPPSSPPPSPPPPVVTSPPPAPIVTSPPPAPVVTSPPPAPATAAPPPDETSPPPPNLSPPPPASGSPPPKSSKPSPPPPSPGNVSKPPSANPPPAPHAKPPKSTPSPPSPDASPPSVSQPPPLHDASSPSVSQPPPSHDASPPSVSQSPPSPSTVPPPSTPSTLTSGPAATPTNETVHGGSPNVPLPSRPSVDGSGNIATNNTPSHSGGLNTGAAVTIGVVVSLIVLSLLGIAVFFVQKKKKGKGSRSDYAAPSPFTSSHNSGTLFLKPYTPANLNGSGNGSEYVYSPPEPSGVNNSRSWLTYEELIQATNGFSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHDEKAPVLNWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLIEALDTEDFETLVDPRLDKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVMRAFDSMAEFSDLNNGMKPGQSSVFDSAQQSAQIKMFRRMAFGSQDSSTFFNDSQSSYGSRNQDSTTMLPQNKSRPWNVRDDPL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi390g00023 760 SUPERFAMILY Protein kinase-like (PK-like) 385 678 IPR011009 -
Vivi390g00023 760 MobiDBLite consensus disorder prediction 728 760 - -
Vivi390g00023 760 ProSiteProfiles Protein kinase domain profile. 408 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi390g00023 760 SMART serkin_6 408 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi390g00023 760 MobiDBLite consensus disorder prediction 728 750 - -
Vivi390g00023 760 MobiDBLite consensus disorder prediction 1 304 - -
Vivi390g00023 760 CDD STKc_IRAK 414 678 - -
Vivi390g00023 760 MobiDBLite consensus disorder prediction 230 258 - -
Vivi390g00023 760 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 318 728 IPR047117 -
Vivi390g00023 760 Pfam Protein tyrosine and serine/threonine kinase 411 678 IPR001245 GO:0004672|GO:0006468
Vivi390g00023 760 MobiDBLite consensus disorder prediction 1 16 - -
Vivi390g00023 760 PRINTS Proline rich extensin signature 82 107 - -
Vivi390g00023 760 PRINTS Proline rich extensin signature 46 62 - -
Vivi390g00023 760 PRINTS Proline rich extensin signature 25 46 - -
Vivi390g00023 760 PRINTS Proline rich extensin signature 64 81 - -
Vivi390g00023 760 Gene3D Transferase(Phosphotransferase) domain 1 483 699 - -
Vivi390g00023 760 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Vivi390g00023 760 MobiDBLite consensus disorder prediction 22 217 - -
Vivi390g00023 760 MobiDBLite consensus disorder prediction 259 276 - -
Vivi390g00023 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Vivi390g00023 760 FunFam proline-rich receptor-like protein kinase PERK8 483 695 - -
Vivi390g00023 760 Gene3D Phosphorylase Kinase; domain 1 383 482 - -
Vivi390g00023 760 FunFam Proline-rich receptor-like protein kinase PERK8 381 482 - -
Vivi390g00023 760 MobiDBLite consensus disorder prediction 283 304 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi390g00023 167 724 Trihelix Transcription Factor Family AT1G70460 50.085 3.55e-169 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi390g00023 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi390g00023 - - gmx:100784873 802.742