Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi390g00022 ATGGCTTCAGTTACTCTTTCTCCAAATGCTTCTCCTGTTGTTGCTTTGCCTCCATCATCTAGTGTTGTTGTTTTGTCACCACCGCCACCATCGCCTCAGTCGAATCAAACATCGAATTCTCCTCCTCCTTTATCTCCTTCGGAGCCTACGGCTCTTCCTCCTTCTGATCCTTCAGTTCCTCCTCCTTCGCCTTCAGAGACAGTGCCTGATACTCCTCCTCCTTCGCCACCCGTATCTCCTCCTCCGTCTCCAACTCCACCCCTTTCTCCTCCACCATCAACTACACCGCCGCCAAGTTCTCCACCACCATCGCCACCACCACCAGTTGTAACATCACCACCTCCTGCACCAATTGTAACATCACCACCTCCTGCACCAGTTGTAACATCACCACCTCCTGCACCAGCTACCGCTGCCCCTCCTCCCGATGAAACTTCACCTCCGCCTCCAAATTTGTCTCCACCACCTCCAGCGTCTGGTTCCCCTCCCCCTAAATCATCAAAGCCATCTCCACCACCTCCTTCTCCAGGTAATGTATCAAAGCCACCATCTGCCAATCCTCCTCCTGCACCACACGCAAAGCCACCAAAAAGTACGCCTTCACCTCCTTCACCTGATGCGTCCCCTCCATCAGTTTCTCAACCACCTCCTTCACATGATGCATCGCCTCCATCTGTTTCTCAATCACCTCCTTCCCCTTCAACTGTTCCACCTCCATCCACACCATCAACTCTTACTTCAGGACCTGCAGCAACTCCTACTAACGAAACAGTACATGGTGGCAGTCCAAATGTGCCATTGCCATCTAGACCAAGTGTTGACGGTTCTGGTAATATAGCCACAAACAACACTCCTTCACATTCAGGAGGGTTAAATACCGGAGCTGCTGTTACTATTGGCGTTGTAGTTAGTTTAATTGTCCTCAGCCTTCTTGGTATCGCTGTGTTCTTTGTACAGAAAAAGAAAAAGGGGAAAGGATCCAGATCTGATTATGCTGCGCCTTCTCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCATACACTCCAGCCAATTTGAATGGGAGTGGCAATGGTAGTGAATATGTGTATTCACCACCGGAGCCAAGTGGAGTAAATAATTCAAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTTTTCAGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGCGGTGGACAAGGGGAACGTGAGTTTAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCACCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTCGTCTACGACTATGTTCCCAACGATACTCTTCATTATCATCTACATGATGAAAAAGCACCCGTTTTGAATTGGCCTATCAGAGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTGGTTTCAGATTTTGGGCTTGCGAAATTAGCACTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACATTTGGATATATGGCACCAGAATATGCGACGAGTGGAAAATTGACTGATAAGTCTGATGTATATTCCTTTGGTGTCGTGCTTTTAGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAGCCACTTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGATTGAAGCACTCGATACAGAGGACTTTGAAACTTTGGTGGATCCAAGACTAGATAAGAACTACAACAGAAACGAAATGTTTAGAATGATTGAGGCTGCCGCAGCCTGCGTGCGTCACTCCTCAGTCAAGAGGCCACGGATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCCGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAACAATCTGCACAGATCAAAATGTTTAGGAGAATGGCTTTTGGAAGCCAAGATAGTTCCACTTTCTTTAATGATTCTCAAAGTAGCTATGGAAGTAGGAATCAAGACTCTACAACTATGCTCCCGCAAAATAAATCCCGGCCTTGGAACGTTCGAGACGACCCTTTATAG 2241 0.4636 MASVTLSPNASPVVALPPSSSVVVLSPPPPSPQSNQTSNSPPPLSPSEPTALPPSDPSVPPPSPSETVPDTPPPSPPVSPPPSPTPPLSPPPSTTPPPSSPPPSPPPPVVTSPPPAPIVTSPPPAPVVTSPPPAPATAAPPPDETSPPPPNLSPPPPASGSPPPKSSKPSPPPPSPGNVSKPPSANPPPAPHAKPPKSTPSPPSPDASPPSVSQPPPSHDASPPSVSQSPPSPSTVPPPSTPSTLTSGPAATPTNETVHGGSPNVPLPSRPSVDGSGNIATNNTPSHSGGLNTGAAVTIGVVVSLIVLSLLGIAVFFVQKKKKGKGSRSDYAAPSPFTSSHNSGTLFLKPYTPANLNGSGNGSEYVYSPPEPSGVNNSRSWLTYEELIQATNGFSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHDEKAPVLNWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLIEALDTEDFETLVDPRLDKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVMRAFDSMAEFSDLNNGMKPGQSSVFDSAQQSAQIKMFRRMAFGSQDSSTFFNDSQSSYGSRNQDSTTMLPQNKSRPWNVRDDPL 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi390g00022 746 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 714 IPR047117 -
Vivi390g00022 746 SMART serkin_6 394 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi390g00022 746 ProSiteProfiles Protein kinase domain profile. 394 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi390g00022 746 Gene3D Transferase(Phosphotransferase) domain 1 469 685 - -
Vivi390g00022 746 MobiDBLite consensus disorder prediction 714 736 - -
Vivi390g00022 746 FunFam proline-rich receptor-like protein kinase PERK8 469 681 - -
Vivi390g00022 746 SUPERFAMILY Protein kinase-like (PK-like) 371 664 IPR011009 -
Vivi390g00022 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Vivi390g00022 746 MobiDBLite consensus disorder prediction 245 262 - -
Vivi390g00022 746 MobiDBLite consensus disorder prediction 1 16 - -
Vivi390g00022 746 MobiDBLite consensus disorder prediction 22 244 - -
Vivi390g00022 746 Gene3D Phosphorylase Kinase; domain 1 369 468 - -
Vivi390g00022 746 FunFam Proline-rich receptor-like protein kinase PERK8 367 468 - -
Vivi390g00022 746 Pfam Protein tyrosine and serine/threonine kinase 397 664 IPR001245 GO:0004672|GO:0006468
Vivi390g00022 746 MobiDBLite consensus disorder prediction 269 290 - -
Vivi390g00022 746 MobiDBLite consensus disorder prediction 1 290 - -
Vivi390g00022 746 PRINTS Proline rich extensin signature 82 107 - -
Vivi390g00022 746 PRINTS Proline rich extensin signature 25 46 - -
Vivi390g00022 746 PRINTS Proline rich extensin signature 64 81 - -
Vivi390g00022 746 PRINTS Proline rich extensin signature 46 62 - -
Vivi390g00022 746 CDD STKc_IRAK 400 664 - -
Vivi390g00022 746 MobiDBLite consensus disorder prediction 714 746 - -
Vivi390g00022 746 ProSitePatterns Protein kinases ATP-binding region signature. 400 421 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi390g00022 152 710 Trihelix Transcription Factor Family AT1G70460 49.069 2.55e-168 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi390g00022 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi390g00022 - - gmx:100784873 799.275