Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi390g00006 ATGGGAAAGAAAAAGACAGATGATGCAGGTCCATCTACAAAGGCTAAAGCAAGTAGTAAAGATGTTTCTAAGAAGGAAAAACTTTCTGTATCTGCCTTTTTGGCAAGTGCGCAGGAAAAATCTGATAAACCTAAAAAAGCTTCTTCCTCGAATAAGCCGAAGCCGAAACTTGCAGCTTCTACATACACTGATGGTATTGATCTTCCTCCCTCCTCTGATGATGAATCCGAAGAGGAGTTAGAGCAAAAGCATAGACCTGATGTGAAACCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCCATCAGGCTGAACAGGCAAGGAAAGAAGCTCTTAGGGATGATCATGATGCTTTCACTGTTGTTATTGGAAGTCGGGCTTCGGTGCTTGATGGAGATGATGGTGCTGATGCTAATGTCAAAGATATTACGATAGAAAATTTTTCAGTGTCTGCTCGTGGTAAAGAACTTCTGAAGAATGCATCGGTGAAGATATCTCATGGAAAGCGGTATGGTTTAGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCCGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCCGTCGTTTCAGCTAATGCTGAACTTGTTAAAGTTCGACAAGAAGTTGCTGATCTACAAAATGCAGCTTCTGGTGAAGGTGTGGATAAAGATGATACTAATGAGGATGGGGATGCCGACAAGCTAGCAGAGCTATATGACCAATTACAACTGATGGGGTCTGATGCTGCTGAATCCCAAGCGTCAAAGATTTTAGCCGGTCTGGGTTTTACTAAGGATATGCAGGGTCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGTGCACTTTTTGTACAGCCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAGAAAACTTTGGTGGTTGTATCACACGACAGAGATTTCCTCAATACTGTATGCTCTGAAATTATTCACCTGCATGATTTCAAACTTCACTTCTATCGTGGAAATTTTGATGCTTTTGAAAGTGGTTATGAGCAGCGTCGTAGAGAGGTGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGACTGGAAACAAGGCTAATCAAGATAAGGTTAAGGATCGAGCCAAGTTTGCAGCTGCCAAGCAAGCATCGAAAAGCAAAAGTAAGGGAAAGGTTGATGAGGATGAAACCCAGGTAGAGGCACCACACAAATGGAGGGACTACAGTGTGGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCTCTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGCGGATTTCAGACTCTCAAATGTTGATGTTGGAATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTTTAGCCGGTGATTTAGATCCAAGCGAAGGTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTAAGGATTGGGAGATATTCCCAACATTTTGTGGACTTACTGACGATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCACCCAGACCAGGAGGGACTTAGTAAGCAGGAAGCTGTCCGGGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACACCCATTGTCAAACTATCAGGAGGGCAGAAATCTCGAGTCGTTTTCACGTCGATATCCATGTCAAGACCTCACATTTTATTGTTGGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCCGATGCGCTCGATGAATTCACAGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCACGTGTCTGTGATGATGAAGAAAAAAGTCAAATATGGGTTGTTGAGGATGGCACTGTCAGAAGATTCCCTGGAACATTTGATGAGTACAAAGAAGATTTACTGAAGGAGATTAAAGCTGAAGTTGATGATTGA 2142 0.4272 MGKKKTDDAGPSTKAKASSKDVSKKEKLSVSAFLASAQEKSDKPKKASSSNKPKPKLAASTYTDGIDLPPSSDDESEEELEQKHRPDVKPLEVSIAEKELKKREKKDILAAHQAEQARKEALRDDHDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQEVADLQNAASGEGVDKDDTNEDGDADKLAELYDQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDFKLHFYRGNFDAFESGYEQRRREVNKKYEIYDKQLKAAKRTGNKANQDKVKDRAKFAAAKQASKSKSKGKVDEDETQVEAPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRADFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLDPSEGEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEEKSQIWVVEDGTVRRFPGTFDEYKEDLLKEIKAEVDD 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi390g00006 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 711 IPR003439 GO:0005524
Vivi390g00006 713 Pfam ABC transporter 168 337 IPR003439 GO:0005524
Vivi390g00006 713 FunFam ABC transporter F family member 4 449 713 - -
Vivi390g00006 713 CDD ABCF_EF-3 484 688 - -
Vivi390g00006 713 FunFam ABC transporter F family member 4 151 433 - -
Vivi390g00006 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 153 405 IPR003439 GO:0005524
Vivi390g00006 713 SMART AAA_5 177 381 IPR003593 GO:0016887
Vivi390g00006 713 SMART AAA_5 510 702 IPR003593 GO:0016887
Vivi390g00006 713 Pfam ABC transporter 501 638 IPR003439 GO:0005524
Vivi390g00006 713 MobiDBLite consensus disorder prediction 437 459 - -
Vivi390g00006 713 Coils Coil 95 115 - -
Vivi390g00006 713 ProSitePatterns ABC transporters family signature. 309 323 IPR017871 GO:0005524|GO:0016887
Vivi390g00006 713 Coils Coil 401 421 - -
Vivi390g00006 713 Gene3D - 446 712 IPR027417 -
Vivi390g00006 713 CDD ABCF_EF-3 153 382 - -
Vivi390g00006 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 698 IPR027417 -
Vivi390g00006 713 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 707 - -
Vivi390g00006 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 412 IPR027417 -
Vivi390g00006 713 MobiDBLite consensus disorder prediction 1 89 - -
Vivi390g00006 713 Coils Coil 229 249 - -
Vivi390g00006 713 Gene3D - 150 433 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi390g00006 483 698 Calmodulin-binding Proteins AT2G36910 30.000 1.14e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi390g00006 K06184 - gmx:100806865 1145.95